|
DADA2 denoise is removing more than 50% of the data
|
|
5
|
487
|
April 10, 2023
|
|
Error with dada2 (return code 1) isBimeraDenovoTable
|
|
14
|
485
|
December 18, 2021
|
|
running uchime-ref after deblur -- general questions and parameters
|
|
14
|
803
|
October 15, 2021
|
|
Used degenerate primers for sequencing, concerned that my reads are being confused as chimeras
|
|
2
|
872
|
October 3, 2021
|
|
DADA2：low non-chimeric
|
|
2
|
860
|
October 1, 2021
|
|
What are the criteria for choosing the optimal "--p-min-fold-parent-over-abundance" parameter in dada2?
|
|
2
|
763
|
August 10, 2021
|
|
high chimera rate in dada2
|
|
4
|
4296
|
November 17, 2020
|
|
Do I need to remove chimera with qiime vsearch uchime-denovo after denosing by Dada2
|
|
7
|
2177
|
July 14, 2020
|
|
Losing reads as chimeras
|
|
11
|
3278
|
June 19, 2020
|
|
DADA2 Denoise: Different Chimera parameters same output
|
|
20
|
1891
|
April 20, 2020
|
|
Statistics from de novo chimera removal
|
|
12
|
979
|
May 11, 2020
|
|
Up to 97% of sequences being removed by filtering/denoising in DADA2
|
|
5
|
1531
|
January 21, 2020
|
|
DADA2 denoise-single chimera removal inconsistence
|
|
21
|
2652
|
September 2, 2019
|
|
fasta file analysis in QIIME2
|
|
10
|
4656
|
June 10, 2019
|
|
Too many chimeras in my samples?
|
|
3
|
1567
|
May 16, 2019
|
|
Chimera check in dada2 and with vsearch uchime-denovo
|
|
6
|
2800
|
June 28, 2018
|
|
Plugin error: when doing the de novo chimera checking
|
|
5
|
640
|
March 26, 2018
|
|
Chimera check questions
|
|
10
|
6420
|
February 6, 2018
|
|
Chimera separate filtering
|
|
3
|
1118
|
January 22, 2018
|
|
Estimated time for DADA2 process
|
|
9
|
4084
|
December 22, 2017
|
|
Identifying and filtering chimeric feature sequences with vsearch
|
|
1
|
5125
|
February 15, 2018
|
|
Problem with DADA2
|
|
3
|
1323
|
November 3, 2017
|
|
Chimera checking and bar plots
|
|
4
|
1383
|
August 11, 2017
|
