RIM-DB database files

Natchaphon_Rajudom · October 15, 2025, 4:01am

Where can I download both fasta and taxonomy for RIM-DB?

I cannot access http://www.globalrumencensus.org.nz, which deposit files need for taxonomic classifier. Is there any way I can get those files to use in QIIME2 analysis?

colinbrislawn · October 15, 2025, 4:05am

The site is down for me as well...

Here's a link to an old version from the Internet Archive:

That page just says to use the files included in the paper:

Let us know if you need a hand importing these files into Qiime2.

And if you do get this working, let us know!

Natchaphon_Rajudom · October 15, 2025, 7:07am

I tried to download files, but the downloaded zip files cannot be extracted.

colinbrislawn · October 15, 2025, 4:31pm

It works okay for me.

Getting file URL:

### RIM_DB_14_6.fasta.zip

>$ wget https://dfzljdn9uc3pi.cloudfront.net/2014/494/1/FileS1.zip

>$ unzip FileS1.zip 

Archive:  FileS1.zip
  inflating: RIM_DB_14_07.fasta      
  inflating: RIM_DB_14_07.fasta.nin  
  inflating: RIM_DB_14_07.fasta.nhr  
  inflating: RIM_DB_14_07.fasta.nsq

What happens for you? Maybe there's an internet or firewall issue?

Natchaphon_Rajudom · October 16, 2025, 3:17am

It’s my network issue. I appreciated it, thanks.