|
Uneven sample size, a need for rarefaction tool
|
|
9
|
87
|
February 11, 2025
|
|
Why is using rarefaction curves to help determine sampling depth prior to producing core diversity metrics not considered p-hacking/data-peeking?
|
|
5
|
269
|
July 24, 2024
|
|
How to choose my sampling depth according to aplpha rarefaction plot?
|
|
15
|
476
|
July 29, 2024
|
|
Rarefaction: diversity or richness?
|
|
3
|
644
|
March 7, 2024
|
|
rarefaction curve with number of samples on x axis
|
|
4
|
532
|
November 5, 2023
|
|
Statistical analyses for beta-rarefaction output
|
|
2
|
214
|
September 15, 2023
|
|
how to compute alpha diversity and beta diversity without rarefaction
|
|
5
|
1536
|
June 10, 2023
|
|
Are there difference rarefaction cut-off and rarefying in the micorbiome analysis ?
|
|
9
|
1543
|
April 26, 2023
|
|
q2-repeat-rarefy: QIIME2 plugin for generating the average rarefied table for library size normalization using repeated rarefaction
|
|
1
|
1823
|
March 22, 2023
|
|
If is normal that the exaggerated different between the numbers of ASV and OTU using the same sequencing data?
|
|
1
|
480
|
January 10, 2023
|
|
Different Rarefaction Depths Between Sample Types
|
|
1
|
1037
|
November 23, 2022
|
|
Get different number of sequences in denoising-stats and feature-table sums.
|
|
0
|
320
|
August 24, 2022
|
|
Rarefy alpha beta metrics p sampling depth
|
|
5
|
704
|
July 9, 2022
|
|
Rarefaction or not before calculate "niche breadth", "rare species" and "abundant species“
|
|
5
|
917
|
May 26, 2022
|
|
If the result of beta diversity in core-metrics-results was rarefacted?
|
|
3
|
296
|
June 25, 2022
|
|
Rarefaction plot based on sample size
|
|
2
|
274
|
May 11, 2022
|
|
Error with beta-rarefaction analysis
|
|
12
|
587
|
February 20, 2022
|
|
q2-srs: QIIME2 plugin for library size normalization by scaling with ranked subsampling (SRS)
|
|
3
|
1629
|
December 6, 2021
|
|
Is it necessary to rarefy FeatureData[Sequence] if I rarefy FeatureTable[Freqeuncy]?
|
|
2
|
1142
|
November 15, 2021
|
|
rarefy table with/without replacement default
|
|
4
|
1299
|
May 24, 2021
|
|
Core features / normalization
|
|
0
|
451
|
April 1, 2021
|
|
interpretation of rarefaction curve
|
|
4
|
1369
|
May 7, 2021
|
|
SRS: Alternative tool for library size normalisation
|
|
16
|
3741
|
December 1, 2020
|
|
rarefaction vs. relative abundance
|
|
7
|
2907
|
October 12, 2020
|
|
Rarefaction plot and rarefied table
|
|
2
|
1996
|
November 9, 2020
|
|
Discarded samples from rarefaction reason/solution/occurence
|
|
1
|
565
|
October 7, 2020
|
|
Is percentile-normalized data appropriate for UniFrac?
|
|
5
|
1193
|
August 13, 2020
|
|
Why are my beta diversity results different from the tutorial?
|
|
6
|
607
|
August 9, 2020
|
|
qiime diversity core-metrics-phylogenetic: singletons in rarefied table
|
|
3
|
505
|
April 30, 2020
|
|
Error in feature-table rarefy with imported table
|
|
6
|
1122
|
December 16, 2019
|
