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Quality control for shotgun metagenomics
|
|
5
|
574
|
July 17, 2025
|
|
exclude-seqs: Understanding how is the best threshold for perc-identity and perc-query-aligned
|
|
3
|
47
|
April 18, 2025
|
|
Weird V4 profile
|
|
14
|
102
|
September 30, 2024
|
|
Interactive quality plots of NextSeq data
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5
|
366
|
July 13, 2024
|
|
Host genes removal from a SampleData artifact
|
|
2
|
179
|
June 3, 2024
|
|
Generating and analyzing mock communities
|
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7
|
830
|
May 15, 2023
|
|
Mock Communities for Assessing Quality Control
|
|
10
|
1793
|
March 2, 2023
|
|
Low non-chimeric input after DADA2 denoising
|
|
11
|
1114
|
March 10, 2023
|
|
Mock comunity workflow
|
|
1
|
414
|
November 27, 2022
|
|
Should we truncate or not?
|
|
2
|
764
|
May 1, 2022
|
|
Quality control
|
|
4
|
1621
|
September 2, 2021
|
|
Why do the DADA2 default setting have such a low PHRED score?
|
|
12
|
4666
|
August 13, 2021
|
|
Automated sequence truncation algorithm
|
|
8
|
911
|
July 22, 2021
|
|
Plugin error from quality-control: min() arg is an empty sequence
|
|
9
|
1895
|
July 22, 2021
|
|
quality control evaluate taxonomy - outputs blank file
|
|
4
|
641
|
April 25, 2021
|
|
quality scores boxplot bad quality
|
|
2
|
1404
|
April 3, 2021
|
|
DADA2 Quality Control ERROR
|
|
2
|
800
|
March 13, 2021
|
|
q2 quality-control evaluate-composition - numerator/denominator
|
|
2
|
464
|
December 21, 2020
|
|
q2-cutadapt output
|
|
27
|
5763
|
December 4, 2020
|
|
Cutadapt prior to dada2 denoise-paired
|
|
8
|
1783
|
May 23, 2020
|
|
Meaning of proportion output of q2 quality-control evaluate-composition
|
|
2
|
608
|
May 13, 2020
|
|
Short sequence or longer sequence with ambiguous base of 16S v3-v4 sequencing
|
|
5
|
1765
|
March 21, 2020
|
|
qiime feature-table filter-features
|
|
5
|
3804
|
December 15, 2019
|
|
fastq quality too good to be true?
|
|
4
|
2030
|
November 30, 2019
|
|
Bizarre sequence quality from a Nature paper's NCBI data
|
|
2
|
830
|
November 27, 2019
|
|
impact of quality primer on the quality of data
|
|
3
|
679
|
November 10, 2019
|
|
How to remove undesired reads obtain in one sample
|
|
2
|
508
|
September 12, 2019
|
|
Problems with q2-quality-control using Mockrobiota
|
|
15
|
1839
|
July 16, 2019
|
|
dada2 Sequence quality control
|
|
5
|
1716
|
June 10, 2019
|
|
Error when running qiime quality-control evaluate-seqs
|
|
1
|
466
|
March 8, 2019
|
