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Quality control for shotgun metagenomics
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5
|
584
|
July 17, 2025
|
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exclude-seqs: Understanding how is the best threshold for perc-identity and perc-query-aligned
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3
|
57
|
April 18, 2025
|
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Weird V4 profile
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14
|
106
|
September 30, 2024
|
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Interactive quality plots of NextSeq data
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5
|
376
|
July 13, 2024
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Host genes removal from a SampleData artifact
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2
|
185
|
June 3, 2024
|
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Generating and analyzing mock communities
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7
|
838
|
May 15, 2023
|
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Mock Communities for Assessing Quality Control
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10
|
1796
|
March 2, 2023
|
|
Low non-chimeric input after DADA2 denoising
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11
|
1125
|
March 10, 2023
|
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Mock comunity workflow
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1
|
418
|
November 27, 2022
|
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Should we truncate or not?
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2
|
765
|
May 1, 2022
|
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Quality control
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4
|
1622
|
September 2, 2021
|
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Why do the DADA2 default setting have such a low PHRED score?
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12
|
4672
|
August 13, 2021
|
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Automated sequence truncation algorithm
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8
|
921
|
July 22, 2021
|
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Plugin error from quality-control: min() arg is an empty sequence
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9
|
1902
|
July 22, 2021
|
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quality control evaluate taxonomy - outputs blank file
|
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4
|
642
|
April 25, 2021
|
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quality scores boxplot bad quality
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2
|
1408
|
April 3, 2021
|
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DADA2 Quality Control ERROR
|
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2
|
801
|
March 13, 2021
|
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q2 quality-control evaluate-composition - numerator/denominator
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2
|
465
|
December 21, 2020
|
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q2-cutadapt output
|
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27
|
5769
|
December 4, 2020
|
|
Cutadapt prior to dada2 denoise-paired
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8
|
1810
|
May 23, 2020
|
|
Meaning of proportion output of q2 quality-control evaluate-composition
|
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2
|
612
|
May 13, 2020
|
|
Short sequence or longer sequence with ambiguous base of 16S v3-v4 sequencing
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|
5
|
1769
|
March 21, 2020
|
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qiime feature-table filter-features
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5
|
3821
|
December 15, 2019
|
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fastq quality too good to be true?
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4
|
2041
|
November 30, 2019
|
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Bizarre sequence quality from a Nature paper's NCBI data
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2
|
835
|
November 27, 2019
|
|
impact of quality primer on the quality of data
|
|
3
|
683
|
November 10, 2019
|
|
How to remove undesired reads obtain in one sample
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|
2
|
509
|
September 12, 2019
|
|
Problems with q2-quality-control using Mockrobiota
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15
|
1851
|
July 16, 2019
|
|
dada2 Sequence quality control
|
|
5
|
1721
|
June 10, 2019
|
|
Error when running qiime quality-control evaluate-seqs
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|
1
|
468
|
March 8, 2019
|
