|
Quasi-Likelihood method appropriate?
|
|
3
|
21
|
June 8, 2020
|
|
Should OTU OR ASV table be adjusted for copy number?
|
|
1
|
35
|
June 5, 2020
|
|
Contamination and High Biomass samples
|
|
4
|
93
|
June 4, 2020
|
|
what is the meaning and difference between alpha and beta diversity metrics?
|
|
6
|
74
|
July 5, 2020
|
|
the difference between PCoA plot generated by pcoa-biplot and by emperor
|
|
4
|
65
|
July 4, 2020
|
|
Building a database in order to train a classifier
|
|
3
|
55
|
June 2, 2020
|
|
Testing for differential abundance and diversity for different host traits
|
|
4
|
63
|
June 1, 2020
|
|
Pielou’s evenness, Faith's PD and Shannon’s diversity indices for ASVs instead of "species"
|
|
7
|
130
|
June 1, 2020
|
|
Interpretation of LefSe and ANCOM results
|
|
2
|
61
|
May 29, 2020
|
|
Removing internal section of sequences in .fasta file
|
|
1
|
35
|
May 21, 2020
|
|
How genetic modification can improve envronmental sustainablility: Green Genes
|
|
1
|
33
|
May 28, 2020
|
|
Should all samples from exactly the same protocol have similar number of reads (raw data)?
|
|
7
|
95
|
May 27, 2020
|
|
Need help understanding the outputs from GNEISS
|
|
5
|
82
|
May 26, 2020
|
|
How to incorporate the baseline data within a crossover analysis?
|
|
2
|
42
|
May 26, 2020
|
|
Ideal sample size?
|
|
3
|
91
|
May 21, 2020
|
|
Taxonomic database
|
|
2
|
46
|
May 19, 2020
|
|
Doubt about feature table
|
|
4
|
57
|
May 18, 2020
|
|
Hierarchical Feature Engineering (HFE)
|
|
3
|
42
|
June 17, 2020
|
|
Reasons for an extreme overgrowth of Akkermansia in a sample?
|
|
8
|
76
|
May 16, 2020
|
|
Overall workflow and paired reads
|
|
5
|
57
|
May 15, 2020
|
|
Sampling depth - Is my sampling depth ideal
|
|
7
|
117
|
June 15, 2020
|
|
p and q value beta diversity
|
|
4
|
40
|
May 13, 2020
|
|
Reasons to use Greengenes / Silva databases instead of NCBI Blast?
|
|
3
|
60
|
May 12, 2020
|
|
Taxonomic Clean Up
|
|
6
|
77
|
May 7, 2020
|
|
Vsearch consensus silva 99
|
|
3
|
26
|
May 7, 2020
|
|
Help on differential abundance analysis of different library sizes (>60x)
|
|
2
|
45
|
May 6, 2020
|
|
reference databases: SILVA vs. Greengenes vs. GTDB
|
|
3
|
81
|
May 4, 2020
|
|
Why is NCBI not used for training classifiers?
|
|
5
|
135
|
June 5, 2020
|
|
qiime feature-table filter-features within replicates
|
|
3
|
44
|
May 4, 2020
|
|
Analysis microbial diversity
|
|
6
|
60
|
May 3, 2020
|
