|
dada2 or vsearch
|
|
6
|
107
|
December 7, 2020
|
|
Necessity of Alpha-, Beta Diversity and Rarefaction Before Drawing a Taxa Bar-plot.
|
|
2
|
77
|
December 6, 2020
|
|
Primer removal from Reads.
|
|
2
|
59
|
December 4, 2020
|
|
Replace missing taxonomic ranks
|
|
4
|
49
|
December 4, 2020
|
|
Difference between Vsearch and naive_bayes classifier
|
|
2
|
45
|
January 1, 2021
|
|
16S rRNA sequencing analysis theoretical question
|
|
5
|
125
|
December 4, 2020
|
|
Lost primers / barcodes information
|
|
5
|
79
|
December 3, 2020
|
|
Differential abundance (DA) analysis before or after feature table collapse to a specific taxonomical level
|
|
3
|
61
|
December 3, 2020
|
|
SRS: Alternative tool for library size normalisation
|
|
17
|
515
|
December 1, 2020
|
|
Using QIIME2 to view 454 pyrosequencing data
|
|
5
|
106
|
December 22, 2020
|
|
Please all help me in Generating Functional Gene(s) Database!
|
|
2
|
59
|
November 19, 2020
|
|
IonTorrent 16S Metagenomic Kit - considerations and problems
|
|
5
|
151
|
December 17, 2020
|
|
Where to find a beneficial microbe(probiotics) database?
|
|
1
|
46
|
November 15, 2020
|
|
Paired end: 2x151 vs 2x250 for V4
|
|
7
|
107
|
November 13, 2020
|
|
Best way to analyse samples from different sequencing batches separately (per batch)?
|
|
6
|
66
|
November 12, 2020
|
|
multi-omics distance comparison
|
|
1
|
51
|
November 11, 2020
|
|
Use of Unique Molecular Identifiers for 16S sequencing
|
|
2
|
74
|
November 10, 2020
|
|
Do the EMP 18S rRNA primers amplify bacteria as well?
|
|
5
|
592
|
November 10, 2020
|
|
DESeq2 vs. ANCOM results
|
|
3
|
192
|
December 11, 2020
|
|
Qiime2 and Kraken2
|
|
3
|
122
|
November 9, 2020
|
|
Another topic on negative controls
|
|
2
|
55
|
December 6, 2020
|
|
Adjustment for sequencing depth vs. Rarefaction
|
|
3
|
76
|
November 5, 2020
|
|
Closed-reference method - different hypervariable regions
|
|
3
|
56
|
November 4, 2020
|
|
PacBio vs. MiSeq
|
|
4
|
130
|
November 3, 2020
|
|
How are these feature ids different?
|
|
5
|
152
|
October 28, 2020
|
|
Do people still use PICRUST?
|
|
6
|
115
|
October 28, 2020
|
|
Finding butyrate producing bacteria in 16S data
|
|
1
|
51
|
October 27, 2020
|
|
features bacterial retio is like in sample or not?
|
|
7
|
101
|
October 26, 2020
|
|
Human fungal ITS database
|
|
1
|
56
|
October 21, 2020
|
|
should the forward sequence data have the exactly same size as reverse?
|
|
3
|
61
|
October 21, 2020
|
