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SILVA or Greengene
|
|
8
|
123
|
July 31, 2020
|
|
Unable to obtain taxonomy using blast!
|
|
3
|
55
|
July 29, 2020
|
|
output of tables-genus.qza
|
|
4
|
64
|
July 28, 2020
|
|
How to validate my results
|
|
3
|
81
|
July 27, 2020
|
|
how to analyze together different batches of samples
|
|
3
|
83
|
July 25, 2020
|
|
Anyone use NextSeq or NovaSeq for 16S sequencing?
|
|
7
|
173
|
July 23, 2020
|
|
Otu_table in Qiime 2 or R
|
|
2
|
44
|
July 22, 2020
|
|
OTU abundance threshold - 0,005% of what
|
|
5
|
113
|
August 22, 2020
|
|
How to incorporate the baseline data within a crossover analysis?
|
|
3
|
61
|
July 21, 2020
|
|
How to derive the distance matrix (similarity matrix of ASV)
|
|
7
|
87
|
July 20, 2020
|
|
permanova: strengths and weaknesses
|
|
2
|
56
|
July 18, 2020
|
|
technical replicates
|
|
6
|
73
|
July 17, 2020
|
|
converting a presence-absence table with columns as samples and rows as species to a matrix with species in both columns and rows
|
|
2
|
60
|
July 16, 2020
|
|
filtering feature table
|
|
2
|
38
|
August 15, 2020
|
|
Looking for advice on sequencing depth -- Milk samples
|
|
4
|
83
|
July 15, 2020
|
|
chimera removal
|
|
4
|
78
|
August 15, 2020
|
|
How to test whether my data meet Permanova assumption
|
|
4
|
64
|
July 13, 2020
|
|
diversity metrics and batch effects
|
|
5
|
280
|
July 11, 2020
|
|
Differential abundance analysis at high taxonomic ranks
|
|
3
|
89
|
July 10, 2020
|
|
Insects classifier
|
|
4
|
110
|
July 7, 2020
|
|
Mixed modeling vs subsetting?
|
|
1
|
68
|
June 10, 2020
|
|
Analysis workflow
|
|
4
|
99
|
June 29, 2020
|
|
Cannot detect all bacteria in a mock community - any advice on parameters to change?
|
|
4
|
86
|
June 26, 2020
|
|
Singletons removed from feature table(QIIME2 output)
|
|
21
|
195
|
June 26, 2020
|
|
Found 139 sequences that are exactly identical to other sequences in the alignment
|
|
2
|
52
|
June 25, 2020
|
|
Fungal microbiome analysis with Ion PGM
|
|
4
|
49
|
July 26, 2020
|
|
Sequence Counts/Library Sizes - Deciding what threshold to filter out
|
|
2
|
46
|
June 24, 2020
|
|
Merging OTU tables loosing information
|
|
2
|
46
|
June 22, 2020
|
|
FDR corrections
|
|
3
|
62
|
June 21, 2020
|
|
Alpha rarefaction non-categorical data
|
|
8
|
75
|
June 20, 2020
|
