General Discussion


Topic Replies Activity
use qiime1 to generate barcode.fastq.gz before using qiime2 to analyze 16s RNA 4 February 20, 2020
Merge or discard sequences from duplicated samples across multiple runs? 6 February 20, 2020
Using R after analysis done in Qiime2 8 February 20, 2020
Individual difference in microbiome composition 2 February 12, 2020
Good analysese methods to address my research questions--Everyone is wellome to join the disucssion 10 February 11, 2020
High relative abundance at family level. How can I increase the % at genus level? 8 February 10, 2020
beta diversity - pairs of samples 5 February 7, 2020
Questions on data formats and parsing 6 February 6, 2020
Diversity: effects after trimming and not trimming reads 6 February 6, 2020
Non-Microbial classifieds? 2 February 5, 2020
Advanced Topics in Microbiome Bioinformatics with QIIME 2 3 February 5, 2020
How to merge Paired end sequencing while overlap is short 4 February 4, 2020
Database for OTU clustering NCBI 4 February 4, 2020
Closed Reference OTU picking vs taxonomic annotation 3 February 4, 2020
deblur is preferred than dada2 in combining data? 3 February 3, 2020
how to use NCBI sequences as sequence reference database? 3 February 3, 2020
Anyone know what I did wrong with my archae analysis, using the SILVA database for archaea? 2 January 30, 2020
Greengenes Versus Silva 4 January 29, 2020
How to find differences between the communities? 3 January 29, 2020
Can we match 16s species to metagenomics species? 1 January 21, 2020
Is QIIME2 capable of analyzing shotgun sequences 2 January 25, 2020
search: Silva v3-v4 trained classifier 3 January 25, 2020
Sufficient number of reads in a sample for an analysis 8 January 23, 2020
How to use RDP in qiime (steps to follow)? 2 January 22, 2020
Are results made in using other tools (for example Mothur) comparable with those computed on qiime2? 2 January 21, 2020
Can you enter the pipeline at feature table point? 4 January 21, 2020
Is it a reasonable to delete all unclassified and uncultured ASVs in species level ? 5 January 21, 2020
Barcode Files from HMP data and Merging two datasets with different read length 6 February 20, 2020
which method you recommand to do regression analysis of OTU abundance on continuous variable? 5 January 18, 2020
hundreds of samples vsearch OTU 3 January 18, 2020