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Selecting OTU picking methods in QIIME 2
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3
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67
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April 20, 2023
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ASV feature assigning taxa
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2
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53
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April 19, 2023
|
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ANCOM--CLR vs ALR
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3
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88
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May 19, 2023
|
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Need suggesting in analysing specific type of time-series microbiome data
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3
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119
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April 17, 2023
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Microbial loadings on each axis of PCoA plots.
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6
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214
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April 17, 2023
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Interpretation of adonis results, cage effect
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2
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62
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April 17, 2023
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Problems when comparing two paired-end-demux data
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2
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71
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April 15, 2023
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uneven coverage: subsampling of joined R1 and R2 or only R1?
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2
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58
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April 14, 2023
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18s merge problems after using cutadapt
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7
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163
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April 11, 2023
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Is it necessary to transform the read count data into relative abundance form before normalization when analyzing using two different ecosystems (different batches)?
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2
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103
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April 9, 2023
|
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cutadapt cannot remove primer in the middle of reads
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3
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158
|
April 6, 2023
|
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Keep ASV IDs when converting to relative abundance
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6
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148
|
April 5, 2023
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Taxonomy assignment using Silva 138
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17
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512
|
April 5, 2023
|
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Can I take a subsample of representative sequences for phylogenetic tree
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3
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81
|
April 4, 2023
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How can I further analyze the output of q2-picrust2 .qza file
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3
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2033
|
March 30, 2023
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Merge feature tables before or after OTU generation from qiime dada2 output?
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2
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69
|
March 30, 2023
|
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Database for Cyanobacteria
|
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2
|
114
|
March 30, 2023
|
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UniFrac and Phylogenetic Methods with Full-length 16S-ITS-23S Sequences
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3
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89
|
March 29, 2023
|
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Covertion zOTUs files from Usearch11 to Qiime2
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1
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58
|
March 29, 2023
|
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pairwise differences on Axis 3
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4
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171
|
March 27, 2023
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NovaSeq and Dada2 incompatibility.
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9
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311
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March 25, 2023
|
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modeling bacterial features as indepedent variables
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4
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155
|
March 23, 2023
|
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qiime2 distance matrix as input for R
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2
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145
|
March 21, 2023
|
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COI Workflow Parameter Considerations
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6
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131
|
April 21, 2023
|
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choice of fungal primers
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2
|
182
|
March 18, 2023
|
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IonTorrent 16S Metagenomic Kit - Consensus feature table across V regions
|
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9
|
140
|
March 17, 2023
|
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rarefy feature table
|
|
3
|
59
|
March 16, 2023
|
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Reference database curation (qiime rescript evaluate-fit-classifier )
|
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5
|
128
|
March 16, 2023
|
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What does mean 'plant-corpus'?
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2
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76
|
March 9, 2023
|
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Dada2. Filtering steps discards most of my reads
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5
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141
|
March 8, 2023
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