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Training silva classifiers based on NCBI taxonomy
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1
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72
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October 3, 2024
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One vs two adaptor sequences using cutadapt
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4
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68
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September 27, 2024
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Deblur usage for truncation from the end of the read
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1
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11
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September 27, 2024
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number of samples for differential abundance analysis
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2
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19
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September 26, 2024
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Random sampling after DADA2
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3
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32
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September 26, 2024
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Interpreting Silva Bacterial Taxonomy (Incertae Sedis)
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2
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68
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September 24, 2024
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Human gut microbiome study design
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2
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37
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September 23, 2024
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Is it possible to generate raw sequence data from any of the early-stage outputs of the QIIME2 pipeline?
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2
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26
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September 18, 2024
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Filtering ANCOM-BC results: W values and fold-change
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4
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65
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September 17, 2024
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Advantage of collapsed differential abundance
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5
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182
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September 16, 2024
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Nanopore Long Read Demultiplexed Full 16S rRNA Seq
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7
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235
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September 12, 2024
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Qiime2 metagenome october 2024 update
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4
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73
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September 12, 2024
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Issue with SILVA 138.2 and RESCRIPt Compatibility
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2
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142
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September 12, 2024
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Seperating 16S, 18S, ITS, COI and chloroplast sequences
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3
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40
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September 12, 2024
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Is there a way to use files from Nanopore in Qiime2 ?
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5
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1321
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September 11, 2024
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Arbitrary ASV fragment placement in Greengenes2
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0
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39
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September 6, 2024
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Create an ASV table using fasta sequences
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11
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78
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September 6, 2024
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Unclassified at the phylum level
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5
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101
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September 4, 2024
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What laptop does qiime2 run on
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3
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36
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September 2, 2024
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Manually Adding Positive Controls to classifier or reference database
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4
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490
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August 30, 2024
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Associate changes in taxa relative abundances (for all taxa) with calculated changes of continuous metadata variables
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5
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114
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August 29, 2024
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Best Discussion Forum for Greengenes 2?
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7
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119
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August 28, 2024
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Database With Best Accuracy at Genus Level for Human Microbiome?
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8
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122
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August 28, 2024
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Reconciling 16s Databases in a Single Pipeline
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5
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64
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August 28, 2024
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How to choose between full-length Greengenes or SILVA for 16s rRNA V1-V2 analysis with qiime2 pipeline?
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1
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54
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August 27, 2024
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Specificity and Sensitivity at Different Abundances?
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3
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37
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August 24, 2024
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Alpha Diversity q2-longitudinal question
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2
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36
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August 23, 2024
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analysing Eukaryota sequences
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2
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18
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August 22, 2024
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Handling Non-Merging Paired-End 803f-1392r Amplicon Sequences in QIIME 2 for ASV Generation
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7
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33
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August 21, 2024
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Which fungal marker use to quantify fungal population via qPCR?
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4
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24
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August 21, 2024
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