|
Alpha and Beta Diversity analysis using shotgun metagenomics data
|
|
2
|
109
|
January 26, 2026
|
|
Comparing 16S and shotgun metagenomic data with greengenes2
|
|
4
|
141
|
January 20, 2026
|
|
bivalve gut microbiota, water and soil samples What OTU cluster?
|
|
11
|
91
|
January 19, 2026
|
|
Advice in best practice for handling multiple sequencing runs and subset analyses in QIIME 2 (DADA2)
|
|
2
|
61
|
January 16, 2026
|
|
Quickstart not working in Safari, but works on Chrome
|
|
6
|
43
|
May 7, 2026
|
|
Seeking advice for a Thesis project
|
|
5
|
126
|
January 12, 2026
|
|
How to deal with possible cross-contamination by a crucial bacteria
|
|
2
|
60
|
February 8, 2026
|
|
Diversity analysis interpretation
|
|
1
|
43
|
December 17, 2025
|
|
Remove Unassigned ASV for Tree construction
|
|
3
|
51
|
December 16, 2025
|
|
Seeking alternatives to rarefaction for Alpha diversity analysis
|
|
8
|
134
|
December 11, 2025
|
|
Guidance on Merging and Handling Samples from Multiple Sequencing Runs
|
|
5
|
437
|
December 2, 2025
|
|
Lost files - rep-seq already filtered, need combined
|
|
1
|
16
|
November 25, 2025
|
|
priors in qiime2-dada2
|
|
4
|
252
|
November 18, 2025
|
|
How to find the genus level from bacteria with from 16s method
|
|
4
|
76
|
November 18, 2025
|
|
Phylogenetic tree: Reconstruct vs. Prune - When to?
|
|
6
|
138
|
November 15, 2025
|
|
DADA2 -- denoise
|
|
2
|
66
|
November 7, 2025
|
|
MOSHPIT: removing contaminant reads from metagenome data
|
|
12
|
451
|
November 6, 2025
|
|
code “E.AniM” in KO
|
|
2
|
65
|
November 3, 2025
|
|
Filtering all Metazoa and bacteria out of my sample
|
|
1
|
50
|
October 23, 2025
|
|
PERMANOVA results significant, but differential abundance results detect 0 significantly different ASVs
|
|
3
|
192
|
October 20, 2025
|
|
Interpreting KEGG vs MetaCyc pathways in 16S (PICRUSt2) functional prediction
|
|
1
|
148
|
October 18, 2025
|
|
Rarefaction vs Rarefying and when to use them in your analysis pipeline
|
|
16
|
1395
|
October 16, 2025
|
|
Converting 16S V3–V4 ASV reads to absolute copy numbers (qPCR / spike-in calibration?)
|
|
3
|
105
|
October 9, 2025
|
|
How to test for dissimilarity for my samples
|
|
2
|
273
|
October 9, 2025
|
|
Rareifying ASV reads for Alpha and Beta diversity analysis
|
|
1
|
58
|
September 26, 2025
|
|
Ancom-BC2 analysis along time series
|
|
4
|
141
|
September 24, 2025
|
|
Training a classifer for 18S and CO1 edna
|
|
2
|
93
|
September 21, 2025
|
|
Axis value percentages have no meaning in PCoA ?
|
|
5
|
150
|
September 20, 2025
|
|
Why is non-chimera read count often referred to as sequencing depth in 16S rRNA analysis?
|
|
4
|
169
|
September 18, 2025
|
|
Percentage of reads discarded after running DADA2 on NextSeq data
|
|
1
|
67
|
August 25, 2025
|
