Training silva classifiers based on NCBI taxonomy
|
|
1
|
72
|
October 3, 2024
|
One vs two adaptor sequences using cutadapt
|
|
4
|
68
|
September 27, 2024
|
Deblur usage for truncation from the end of the read
|
|
1
|
11
|
September 27, 2024
|
number of samples for differential abundance analysis
|
|
2
|
19
|
September 26, 2024
|
Random sampling after DADA2
|
|
3
|
32
|
September 26, 2024
|
Interpreting Silva Bacterial Taxonomy (Incertae Sedis)
|
|
2
|
68
|
September 24, 2024
|
Human gut microbiome study design
|
|
2
|
37
|
September 23, 2024
|
Is it possible to generate raw sequence data from any of the early-stage outputs of the QIIME2 pipeline?
|
|
2
|
26
|
September 18, 2024
|
Filtering ANCOM-BC results: W values and fold-change
|
|
4
|
65
|
September 17, 2024
|
Advantage of collapsed differential abundance
|
|
5
|
182
|
September 16, 2024
|
Nanopore Long Read Demultiplexed Full 16S rRNA Seq
|
|
7
|
235
|
September 12, 2024
|
Qiime2 metagenome october 2024 update
|
|
4
|
73
|
September 12, 2024
|
Issue with SILVA 138.2 and RESCRIPt Compatibility
|
|
2
|
142
|
September 12, 2024
|
Seperating 16S, 18S, ITS, COI and chloroplast sequences
|
|
3
|
40
|
September 12, 2024
|
Is there a way to use files from Nanopore in Qiime2 ?
|
|
5
|
1321
|
September 11, 2024
|
Arbitrary ASV fragment placement in Greengenes2
|
|
0
|
39
|
September 6, 2024
|
Create an ASV table using fasta sequences
|
|
11
|
78
|
September 6, 2024
|
Unclassified at the phylum level
|
|
5
|
101
|
September 4, 2024
|
What laptop does qiime2 run on
|
|
3
|
36
|
September 2, 2024
|
Manually Adding Positive Controls to classifier or reference database
|
|
4
|
490
|
August 30, 2024
|
Associate changes in taxa relative abundances (for all taxa) with calculated changes of continuous metadata variables
|
|
5
|
114
|
August 29, 2024
|
Best Discussion Forum for Greengenes 2?
|
|
7
|
119
|
August 28, 2024
|
Database With Best Accuracy at Genus Level for Human Microbiome?
|
|
8
|
122
|
August 28, 2024
|
Reconciling 16s Databases in a Single Pipeline
|
|
5
|
64
|
August 28, 2024
|
How to choose between full-length Greengenes or SILVA for 16s rRNA V1-V2 analysis with qiime2 pipeline?
|
|
1
|
54
|
August 27, 2024
|
Specificity and Sensitivity at Different Abundances?
|
|
3
|
37
|
August 24, 2024
|
Alpha Diversity q2-longitudinal question
|
|
2
|
36
|
August 23, 2024
|
analysing Eukaryota sequences
|
|
2
|
18
|
August 22, 2024
|
Handling Non-Merging Paired-End 803f-1392r Amplicon Sequences in QIIME 2 for ASV Generation
|
|
7
|
33
|
August 21, 2024
|
Which fungal marker use to quantify fungal population via qPCR?
|
|
4
|
24
|
August 21, 2024
|