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How to find the genus level from bacteria with from 16s method
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4
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99
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November 18, 2025
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Phylogenetic tree: Reconstruct vs. Prune - When to?
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6
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169
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November 15, 2025
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DADA2 -- denoise
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2
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77
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November 7, 2025
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MOSHPIT: removing contaminant reads from metagenome data
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11
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530
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August 18, 2025
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code “E.AniM” in KO
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2
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70
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November 3, 2025
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Filtering all Metazoa and bacteria out of my sample
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1
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58
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October 23, 2025
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PERMANOVA results significant, but differential abundance results detect 0 significantly different ASVs
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3
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270
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October 20, 2025
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Interpreting KEGG vs MetaCyc pathways in 16S (PICRUSt2) functional prediction
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1
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289
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October 18, 2025
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Converting 16S V3–V4 ASV reads to absolute copy numbers (qPCR / spike-in calibration?)
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3
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137
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October 9, 2025
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How to test for dissimilarity for my samples
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1
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277
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December 22, 2022
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Rareifying ASV reads for Alpha and Beta diversity analysis
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1
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76
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September 26, 2025
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Ancom-BC2 analysis along time series
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4
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180
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September 24, 2025
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Training a classifer for 18S and CO1 edna
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2
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109
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September 21, 2025
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Axis value percentages have no meaning in PCoA ?
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5
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206
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September 20, 2025
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Why is non-chimera read count often referred to as sequencing depth in 16S rRNA analysis?
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4
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208
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September 18, 2025
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Percentage of reads discarded after running DADA2 on NextSeq data
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1
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86
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August 25, 2025
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Batch effects - Normalizing sequencing runs with different sequence counts
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3
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104
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August 20, 2025
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Interpreting usefulness of sequence data from quality scores
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3
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93
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August 15, 2025
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How to account for uneven sampling
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2
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100
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August 9, 2025
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Shall I need to remove ASV with prevelance in one sample?
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4
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143
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August 8, 2025
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Exclude significant results from betadisper from adonis2?
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0
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129
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July 19, 2025
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16S SRNA
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1
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97
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August 2, 2025
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Cage effect ANOVA
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11
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322
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July 31, 2025
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GSR database in QIIME2?
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2
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70
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July 28, 2025
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Problems with Taxonomic Assignment
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1
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61
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July 25, 2025
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Why is there a size difference between my PCR product (~400 bp) and the final representative sequence (313 bp)?
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4
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256
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July 22, 2025
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Sequence and taxonomy files for Silva v138.2
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2
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209
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July 21, 2025
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Beginner's Project
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2
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70
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July 21, 2025
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Recommended Step for Merging Metagenomics Datasets
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1
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91
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July 16, 2025
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Quality control for shotgun metagenomics
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2
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714
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March 13, 2024
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