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Analysing with multiple public datasets
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4
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61
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June 5, 2025
|
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Qiime2 ConQuR Plugin for Batch Correction (or alternative)
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2
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126
|
June 4, 2025
|
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Shotgun sequencing and Trimming
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2
|
49
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June 3, 2025
|
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Can I run QIIME2 on de-multiplexed 5R 16S files?
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1
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56
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June 3, 2025
|
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Try to compare 16s and wgs with greengenes2
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0
|
58
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May 16, 2025
|
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MAG filtering prior functional annotation
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2
|
101
|
May 28, 2025
|
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Using PCoA versus PCA
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8
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13683
|
May 23, 2025
|
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Can trimming and dada 2
|
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3
|
79
|
May 19, 2025
|
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Knowing how many sequences did not get given taxonomy
|
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1
|
24
|
May 19, 2025
|
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Would you like me to help with troubleshooting the differences between R analysis and the QIIME2 results?
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1
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65
|
May 19, 2025
|
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how to select samples using stacked barplot
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2
|
63
|
May 7, 2025
|
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Request for Bioinformatics Support: Alpha and Beta Diversity Analyses for 16S rRNA Nanopore Sequencing Data
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0
|
119
|
May 5, 2025
|
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Optimising spike-in quantity using qPCR
|
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1
|
90
|
May 1, 2025
|
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How does the sklearn classifier handle ambiguous bases?
|
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3
|
93
|
May 28, 2025
|
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SILVA 138.2 genus names with strain code
|
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3
|
133
|
April 24, 2025
|
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Alpha diversity with filtered raw data or unfiltered raw data
|
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1
|
118
|
April 24, 2025
|
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Density plots along PCoA plot axes?
|
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7
|
127
|
April 23, 2025
|
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Getting oxygen requirements for bacterial species identified by 16S sequencing
|
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4
|
307
|
April 23, 2025
|
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taxonomy mitochondria vs D_4__Mitochondria
|
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2
|
54
|
April 22, 2025
|
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PERMANOVA and PERMDISP and pairwise
|
|
7
|
476
|
April 21, 2025
|
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still default behavior after setting TMPDIR
|
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8
|
170
|
May 17, 2025
|
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Best analysis to do after CCA?
|
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1
|
62
|
April 14, 2025
|
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Alpha diversity without rarefaction
|
|
2
|
128
|
April 10, 2025
|
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Best Studies for Genus Accuracy of 16S Sequencing
|
|
5
|
151
|
April 7, 2025
|
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How can I perform learnErrors on a subset of reads?
|
|
3
|
68
|
April 7, 2025
|
|
NCBI: How to link BioSample to BankIt submission?
|
|
0
|
52
|
March 28, 2025
|
|
QIIME in clinical hospital and commercial laboratory settings
|
|
11
|
192
|
April 4, 2025
|
|
Visualizing ANCOMBC data over time
|
|
3
|
220
|
April 1, 2025
|
|
QIIME2 microbiome analysis and python version
|
|
2
|
86
|
March 29, 2025
|
|
Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
|
|
8
|
280
|
March 27, 2025
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