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Request for Pre-trained SILVA V1–V3 Naive Bayes Classifier
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3
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97
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July 20, 2025
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classify-sklearn vs classify-consensus-vsearch - classification depth
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2
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128
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June 13, 2025
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Shotgun sequencing of Fungi - UNITE or KRAKEN2
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1
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112
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June 11, 2025
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Feature table and representative sequences for downstream analyses
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2
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41
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July 13, 2025
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PERMANOVA and DESeq2: Re-evaluating Covariates After Subsetting by Time Point
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1
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67
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June 9, 2025
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maarjAM database
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3
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180
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June 6, 2025
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Analysing with multiple public datasets
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4
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65
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June 5, 2025
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Qiime2 ConQuR Plugin for Batch Correction (or alternative)
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2
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146
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June 4, 2025
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Shotgun sequencing and Trimming
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2
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50
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June 3, 2025
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Can I run QIIME2 on de-multiplexed 5R 16S files?
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1
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62
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June 3, 2025
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Try to compare 16s and wgs with greengenes2
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0
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60
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May 16, 2025
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MAG filtering prior functional annotation
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2
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105
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May 28, 2025
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Using PCoA versus PCA
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8
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13784
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May 23, 2025
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Can trimming and dada 2
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3
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80
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May 19, 2025
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Knowing how many sequences did not get given taxonomy
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1
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26
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May 19, 2025
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Would you like me to help with troubleshooting the differences between R analysis and the QIIME2 results?
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1
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67
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May 19, 2025
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how to select samples using stacked barplot
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2
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66
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May 7, 2025
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Request for Bioinformatics Support: Alpha and Beta Diversity Analyses for 16S rRNA Nanopore Sequencing Data
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0
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130
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May 5, 2025
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Optimising spike-in quantity using qPCR
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1
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91
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May 1, 2025
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How does the sklearn classifier handle ambiguous bases?
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3
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99
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May 28, 2025
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SILVA 138.2 genus names with strain code
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3
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137
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April 24, 2025
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Alpha diversity with filtered raw data or unfiltered raw data
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1
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122
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April 24, 2025
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Density plots along PCoA plot axes?
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7
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130
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April 23, 2025
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Getting oxygen requirements for bacterial species identified by 16S sequencing
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4
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307
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April 23, 2025
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taxonomy mitochondria vs D_4__Mitochondria
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2
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59
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April 22, 2025
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PERMANOVA and PERMDISP and pairwise
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7
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513
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April 21, 2025
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still default behavior after setting TMPDIR
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8
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179
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May 17, 2025
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Best analysis to do after CCA?
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1
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64
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April 14, 2025
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Alpha diversity without rarefaction
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2
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134
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April 10, 2025
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Best Studies for Genus Accuracy of 16S Sequencing
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5
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154
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April 7, 2025
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