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General or taxonomic level alpha diversity?
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2
|
99
|
March 24, 2025
|
|
Reading the generated data.
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1
|
32
|
March 24, 2025
|
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Closed reference OTU picking of V3-V4 amplicon against full-length reference database
|
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3
|
75
|
March 21, 2025
|
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Question about analyzing different sample types
|
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3
|
100
|
March 20, 2025
|
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Contents of imported database
|
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6
|
57
|
March 18, 2025
|
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Missing species sequence on Greengenes2 2024.09
|
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2
|
58
|
March 18, 2025
|
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How important is it to remove spacers prior to DADA2 filtering trimming, etc?
|
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2
|
54
|
March 17, 2025
|
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ASV with missing taxonomic annotation
|
|
2
|
111
|
March 11, 2025
|
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Dual-End Barcoding for 16S rRNA Primers: Using Golay Barcodes on Both Forward and Reverse Primers
|
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5
|
80
|
April 10, 2025
|
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How to download seven-number-summaries TSV directly
|
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1
|
35
|
March 7, 2025
|
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PCoA analysis Interpretation Doubt
|
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3
|
62
|
March 6, 2025
|
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Is it valid to rename ASVs classified as ‘uncultivated’ as ‘unclassified’?
|
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9
|
122
|
March 5, 2025
|
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OTU Tables Relative Frequency to Relative Abundance
|
|
9
|
169
|
March 4, 2025
|
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how to phylogenetically analyse 16S genes recovered from metagenome?
|
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2
|
79
|
March 3, 2025
|
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Testing ITS1 Pipeline: Finding mock communities or correcting ITSxpress error
|
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7
|
129
|
March 3, 2025
|
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choosing of sampling depth
|
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7
|
129
|
February 28, 2025
|
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Animals gene family
|
|
1
|
36
|
February 26, 2025
|
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tutorial for merging different sequencing data in qiime2
|
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6
|
107
|
February 26, 2025
|
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Sequencing bacterial 16S amplicons and Fungal ITS amplicons from same soil samples using same indices
|
|
2
|
91
|
February 26, 2025
|
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Identification of Acanthamoeba in 18S rDNA analysis
|
|
1
|
35
|
February 24, 2025
|
|
Recommended timepoints for soil microbiome studies?
|
|
5
|
76
|
February 19, 2025
|
|
Code Review: Custom QIIME 2
|
|
5
|
59
|
March 22, 2025
|
|
Can MiSeq Reagent Kit v2 (500 cycles) be used to sequence V3-V4 region of bacterial 16S rRNA gene?
|
|
4
|
97
|
February 19, 2025
|
|
How to deal with multiple runs for one sample?
|
|
8
|
105
|
February 18, 2025
|
|
Nanopore Long Read Demultiplexed Full 16S rRNA Seq
|
|
8
|
1075
|
February 17, 2025
|
|
Issue with Taxonomy Assignment Using Kraken and Custom Database (BOLD, Nemabiome) in QIIME2
|
|
4
|
260
|
February 14, 2025
|
|
Uneven sample size, a need for rarefaction tool
|
|
9
|
161
|
February 11, 2025
|
|
Analysing merged sequences
|
|
3
|
65
|
February 9, 2025
|
|
non-fungal sequences in ITS2 analyses
|
|
3
|
126
|
February 8, 2025
|
|
Unnasigned ASVs at lower taxonomic ranks can alter metrics of alpha and beta diversity that use the phylogenetical distance?
|
|
2
|
56
|
January 30, 2025
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