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Interpreting usefulness of sequence data from quality scores
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3
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134
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August 15, 2025
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How to account for uneven sampling
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2
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128
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August 9, 2025
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Shall I need to remove ASV with prevelance in one sample?
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4
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166
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August 8, 2025
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Exclude significant results from betadisper from adonis2?
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0
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147
|
July 19, 2025
|
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16S SRNA
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1
|
111
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August 2, 2025
|
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Cage effect ANOVA
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11
|
392
|
July 31, 2025
|
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GSR database in QIIME2?
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2
|
90
|
July 28, 2025
|
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Problems with Taxonomic Assignment
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1
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78
|
July 25, 2025
|
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Why is there a size difference between my PCR product (~400 bp) and the final representative sequence (313 bp)?
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4
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336
|
July 22, 2025
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Sequence and taxonomy files for Silva v138.2
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2
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273
|
July 21, 2025
|
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Beginner's Project
|
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2
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75
|
July 21, 2025
|
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Recommended Step for Merging Metagenomics Datasets
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1
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102
|
July 16, 2025
|
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Quality control for shotgun metagenomics
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2
|
747
|
March 13, 2024
|
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Merging qiime2 sample metadata with exterior taxonomic classifications
|
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1
|
74
|
July 13, 2025
|
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PR2: Division vs. Phylum
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1
|
121
|
July 11, 2025
|
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Is it necessary to separate ASVs classified at genus level into their respective sequences in ANCOMBC2 or other differential abundance analysis?
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2
|
224
|
July 8, 2025
|
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Transforming Alpha Diversity Metrics for Mixed Effects Modeling
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2
|
90
|
July 8, 2025
|
|
Best workflow for samples with high off-target (host) amplification
|
|
7
|
224
|
July 8, 2025
|
|
High percentage of unassigned reads (metagenomics)
|
|
6
|
274
|
July 3, 2025
|
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SILVA trained version for V3-V4 amplicon using 341F/785R primers
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3
|
394
|
July 2, 2025
|
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Looking for Sensible Qiime2 CLI Aliases
|
|
1
|
102
|
July 1, 2025
|
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How to simplify the formula gini index in QIIME2? For example write in a R script.
|
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2
|
110
|
November 1, 2024
|
|
Looking for Comprehensive Qiime2 Documentation
|
|
3
|
206
|
June 23, 2025
|
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Request for Pre-trained SILVA V1–V3 Naive Bayes Classifier
|
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2
|
120
|
June 18, 2025
|
|
classify-sklearn vs classify-consensus-vsearch - classification depth
|
|
2
|
191
|
June 13, 2025
|
|
Shotgun sequencing of Fungi - UNITE or KRAKEN2
|
|
1
|
150
|
June 11, 2025
|
|
Feature table and representative sequences for downstream analyses
|
|
1
|
59
|
June 11, 2025
|
|
PERMANOVA and DESeq2: Re-evaluating Covariates After Subsetting by Time Point
|
|
1
|
96
|
June 9, 2025
|
|
maarjAM database
|
|
3
|
294
|
June 6, 2025
|
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Analysing with multiple public datasets
|
|
4
|
97
|
June 5, 2025
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