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Using PCoA versus PCA
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8
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13590
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May 23, 2025
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Can trimming and dada 2
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3
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76
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May 19, 2025
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Knowing how many sequences did not get given taxonomy
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1
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23
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May 19, 2025
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Would you like me to help with troubleshooting the differences between R analysis and the QIIME2 results?
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1
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64
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May 19, 2025
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how to select samples using stacked barplot
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2
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60
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May 7, 2025
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Request for Bioinformatics Support: Alpha and Beta Diversity Analyses for 16S rRNA Nanopore Sequencing Data
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0
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114
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May 5, 2025
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Optimising spike-in quantity using qPCR
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1
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89
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May 1, 2025
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How does the sklearn classifier handle ambiguous bases?
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3
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92
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May 28, 2025
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SILVA 138.2 genus names with strain code
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3
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132
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April 24, 2025
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Alpha diversity with filtered raw data or unfiltered raw data
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1
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113
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April 24, 2025
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Density plots along PCoA plot axes?
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7
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127
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April 23, 2025
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Getting oxygen requirements for bacterial species identified by 16S sequencing
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4
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307
|
April 23, 2025
|
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taxonomy mitochondria vs D_4__Mitochondria
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2
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53
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April 22, 2025
|
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PERMANOVA and PERMDISP and pairwise
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7
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447
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April 21, 2025
|
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still default behavior after setting TMPDIR
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8
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155
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May 17, 2025
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Best analysis to do after CCA?
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1
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61
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April 14, 2025
|
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Alpha diversity without rarefaction
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2
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126
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April 10, 2025
|
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Best Studies for Genus Accuracy of 16S Sequencing
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5
|
147
|
April 7, 2025
|
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How can I perform learnErrors on a subset of reads?
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3
|
66
|
April 7, 2025
|
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NCBI: How to link BioSample to BankIt submission?
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0
|
50
|
March 28, 2025
|
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QIIME in clinical hospital and commercial laboratory settings
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11
|
191
|
April 4, 2025
|
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Visualizing ANCOMBC data over time
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3
|
214
|
April 1, 2025
|
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QIIME2 microbiome analysis and python version
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2
|
85
|
March 29, 2025
|
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Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
|
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8
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275
|
March 27, 2025
|
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TEF1 metabarcoding: Should I use BLAST or VSEARCH instead of Naive Bayes?
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4
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131
|
March 26, 2025
|
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Investigating the Impact of Travel-Induced Environmental Shifts on Microbiome Stability: A Call for Collaborative Field Studies and Methodological Insights
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0
|
60
|
March 26, 2025
|
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DADA2 generated rep.seqs in R to QIIME2 for making use of the "qiime fragment-insertion sepp"
|
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1
|
50
|
March 25, 2025
|
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General or taxonomic level alpha diversity?
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2
|
141
|
March 24, 2025
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Reading the generated data.
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1
|
35
|
March 24, 2025
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Closed reference OTU picking of V3-V4 amplicon against full-length reference database
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3
|
90
|
March 21, 2025
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