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Optimising spike-in quantity using qPCR
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1
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83
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May 1, 2025
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How does the sklearn classifier handle ambiguous bases?
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3
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91
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May 28, 2025
|
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SILVA 138.2 genus names with strain code
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3
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125
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April 24, 2025
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Alpha diversity with filtered raw data or unfiltered raw data
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1
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96
|
April 24, 2025
|
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Density plots along PCoA plot axes?
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7
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120
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April 23, 2025
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Getting oxygen requirements for bacterial species identified by 16S sequencing
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4
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306
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April 23, 2025
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taxonomy mitochondria vs D_4__Mitochondria
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2
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46
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April 22, 2025
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PERMANOVA and PERMDISP and pairwise
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7
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360
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April 21, 2025
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still default behavior after setting TMPDIR
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8
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139
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May 17, 2025
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Best analysis to do after CCA?
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1
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57
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April 14, 2025
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Alpha diversity without rarefaction
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2
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107
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April 10, 2025
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Best Studies for Genus Accuracy of 16S Sequencing
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5
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144
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April 7, 2025
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How can I perform learnErrors on a subset of reads?
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3
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63
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April 7, 2025
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NCBI: How to link BioSample to BankIt submission?
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0
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47
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March 28, 2025
|
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QIIME in clinical hospital and commercial laboratory settings
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11
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187
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April 4, 2025
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Visualizing ANCOMBC data over time
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3
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203
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April 1, 2025
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QIIME2 microbiome analysis and python version
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2
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83
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March 29, 2025
|
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Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
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8
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258
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March 27, 2025
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TEF1 metabarcoding: Should I use BLAST or VSEARCH instead of Naive Bayes?
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4
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120
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March 26, 2025
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Investigating the Impact of Travel-Induced Environmental Shifts on Microbiome Stability: A Call for Collaborative Field Studies and Methodological Insights
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0
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58
|
March 26, 2025
|
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DADA2 generated rep.seqs in R to QIIME2 for making use of the "qiime fragment-insertion sepp"
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1
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44
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March 25, 2025
|
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General or taxonomic level alpha diversity?
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2
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131
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March 24, 2025
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Reading the generated data.
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1
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33
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March 24, 2025
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Closed reference OTU picking of V3-V4 amplicon against full-length reference database
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3
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89
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March 21, 2025
|
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Question about analyzing different sample types
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3
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110
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March 20, 2025
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Contents of imported database
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6
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80
|
March 18, 2025
|
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Missing species sequence on Greengenes2 2024.09
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2
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73
|
March 18, 2025
|
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How important is it to remove spacers prior to DADA2 filtering trimming, etc?
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2
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59
|
March 17, 2025
|
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ASV with missing taxonomic annotation
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2
|
140
|
March 11, 2025
|
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Dual-End Barcoding for 16S rRNA Primers: Using Golay Barcodes on Both Forward and Reverse Primers
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5
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109
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April 10, 2025
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