|
chimera removal
|
|
4
|
108
|
August 15, 2020
|
|
How to test whether my data meet Permanova assumption
|
|
4
|
94
|
July 13, 2020
|
|
diversity metrics and batch effects
|
|
5
|
375
|
July 11, 2020
|
|
Differential abundance analysis at high taxonomic ranks
|
|
3
|
155
|
July 10, 2020
|
|
Insects classifier
|
|
4
|
140
|
July 7, 2020
|
|
Mixed modeling vs subsetting?
|
|
1
|
77
|
June 10, 2020
|
|
Analysis workflow
|
|
4
|
120
|
June 29, 2020
|
|
Cannot detect all bacteria in a mock community - any advice on parameters to change?
|
|
4
|
110
|
June 26, 2020
|
|
Singletons removed from feature table(QIIME2 output)
|
|
21
|
251
|
June 26, 2020
|
|
Found 139 sequences that are exactly identical to other sequences in the alignment
|
|
2
|
83
|
June 25, 2020
|
|
Fungal microbiome analysis with Ion PGM
|
|
4
|
66
|
July 26, 2020
|
|
Sequence Counts/Library Sizes - Deciding what threshold to filter out
|
|
2
|
62
|
June 24, 2020
|
|
Merging OTU tables loosing information
|
|
2
|
57
|
June 22, 2020
|
|
FDR corrections
|
|
3
|
79
|
June 21, 2020
|
|
Alpha rarefaction non-categorical data
|
|
8
|
102
|
June 20, 2020
|
|
taxonomy analyses, differential abundance
|
|
9
|
507
|
June 20, 2020
|
|
Study design Qeustion
|
|
4
|
102
|
June 19, 2020
|
|
How to archive sequencing runs with multiple experiments
|
|
3
|
77
|
June 17, 2020
|
|
How do I find taxa associated with continuous metadata variables?
|
|
2
|
86
|
June 16, 2020
|
|
comparing dissimilarity within and between groups (adonis-anosim-Kendall's W)
|
|
1
|
183
|
May 27, 2020
|
|
Taxa stability, two time-points
|
|
3
|
118
|
June 15, 2020
|
|
where to truncate reads in DADA2?
|
|
2
|
80
|
June 15, 2020
|
|
Do I need to remove chimera with qiime vsearch uchime-denovo after denosing by Dada2
|
|
8
|
284
|
July 14, 2020
|
|
No significant difference in alpha diversity and PCoA, but significant difference beta diversity
|
|
5
|
166
|
July 12, 2020
|
|
Analysis workflow
|
|
3
|
94
|
June 9, 2020
|
|
How are PCoA axes estimated?
|
|
6
|
186
|
June 8, 2020
|
|
Filter taxa/samples and re-running alpha and beta diversity
|
|
7
|
163
|
July 9, 2020
|
|
Quasi-Likelihood method appropriate?
|
|
3
|
59
|
June 8, 2020
|
|
Should OTU OR ASV table be adjusted for copy number?
|
|
1
|
62
|
June 5, 2020
|
|
Contamination and High Biomass samples
|
|
4
|
171
|
June 4, 2020
|
