|
Transforming Alpha Diversity Metrics for Mixed Effects Modeling
|
|
2
|
72
|
July 8, 2025
|
|
Best workflow for samples with high off-target (host) amplification
|
|
7
|
164
|
July 8, 2025
|
|
High percentage of unassigned reads (metagenomics)
|
|
6
|
168
|
July 3, 2025
|
|
SILVA trained version for V3-V4 amplicon using 341F/785R primers
|
|
3
|
323
|
July 2, 2025
|
|
Looking for Sensible Qiime2 CLI Aliases
|
|
1
|
53
|
July 1, 2025
|
|
How to simplify the formula gini index in QIIME2? For example write in a R script.
|
|
2
|
71
|
November 1, 2024
|
|
Looking for Comprehensive Qiime2 Documentation
|
|
7
|
177
|
June 23, 2025
|
|
Request for Pre-trained SILVA V1–V3 Naive Bayes Classifier
|
|
3
|
99
|
July 20, 2025
|
|
classify-sklearn vs classify-consensus-vsearch - classification depth
|
|
2
|
141
|
June 13, 2025
|
|
Shotgun sequencing of Fungi - UNITE or KRAKEN2
|
|
1
|
120
|
June 11, 2025
|
|
Feature table and representative sequences for downstream analyses
|
|
2
|
43
|
July 13, 2025
|
|
PERMANOVA and DESeq2: Re-evaluating Covariates After Subsetting by Time Point
|
|
1
|
71
|
June 9, 2025
|
|
maarjAM database
|
|
3
|
198
|
June 6, 2025
|
|
Analysing with multiple public datasets
|
|
4
|
66
|
June 5, 2025
|
|
Qiime2 ConQuR Plugin for Batch Correction (or alternative)
|
|
2
|
161
|
June 4, 2025
|
|
Shotgun sequencing and Trimming
|
|
2
|
54
|
June 3, 2025
|
|
Can I run QIIME2 on de-multiplexed 5R 16S files?
|
|
1
|
70
|
June 3, 2025
|
|
Try to compare 16s and wgs with greengenes2
|
|
0
|
63
|
May 16, 2025
|
|
MAG filtering prior functional annotation
|
|
2
|
106
|
May 28, 2025
|
|
Using PCoA versus PCA
|
|
8
|
13946
|
May 23, 2025
|
|
Can trimming and dada 2
|
|
3
|
84
|
May 19, 2025
|
|
Knowing how many sequences did not get given taxonomy
|
|
1
|
31
|
May 19, 2025
|
|
Would you like me to help with troubleshooting the differences between R analysis and the QIIME2 results?
|
|
1
|
72
|
May 19, 2025
|
|
how to select samples using stacked barplot
|
|
2
|
69
|
May 7, 2025
|
|
Request for Bioinformatics Support: Alpha and Beta Diversity Analyses for 16S rRNA Nanopore Sequencing Data
|
|
0
|
141
|
May 5, 2025
|
|
Optimising spike-in quantity using qPCR
|
|
1
|
97
|
May 1, 2025
|
|
How does the sklearn classifier handle ambiguous bases?
|
|
3
|
106
|
May 28, 2025
|
|
SILVA 138.2 genus names with strain code
|
|
3
|
140
|
April 24, 2025
|
|
Alpha diversity with filtered raw data or unfiltered raw data
|
|
1
|
124
|
April 24, 2025
|
|
Density plots along PCoA plot axes?
|
|
7
|
142
|
April 23, 2025
|
