|
Problems with Taxonomic Assignment
|
|
1
|
63
|
July 25, 2025
|
|
Why is there a size difference between my PCR product (~400 bp) and the final representative sequence (313 bp)?
|
|
4
|
280
|
July 22, 2025
|
|
Sequence and taxonomy files for Silva v138.2
|
|
2
|
234
|
July 21, 2025
|
|
Beginner's Project
|
|
2
|
70
|
July 21, 2025
|
|
Recommended Step for Merging Metagenomics Datasets
|
|
1
|
93
|
July 16, 2025
|
|
Quality control for shotgun metagenomics
|
|
2
|
723
|
March 13, 2024
|
|
Merging qiime2 sample metadata with exterior taxonomic classifications
|
|
1
|
62
|
July 13, 2025
|
|
PR2: Division vs. Phylum
|
|
1
|
101
|
July 11, 2025
|
|
Is it necessary to separate ASVs classified at genus level into their respective sequences in ANCOMBC2 or other differential abundance analysis?
|
|
2
|
180
|
July 8, 2025
|
|
Transforming Alpha Diversity Metrics for Mixed Effects Modeling
|
|
2
|
80
|
July 8, 2025
|
|
Best workflow for samples with high off-target (host) amplification
|
|
7
|
179
|
July 8, 2025
|
|
High percentage of unassigned reads (metagenomics)
|
|
6
|
244
|
July 3, 2025
|
|
SILVA trained version for V3-V4 amplicon using 341F/785R primers
|
|
3
|
346
|
July 2, 2025
|
|
Looking for Sensible Qiime2 CLI Aliases
|
|
1
|
87
|
July 1, 2025
|
|
How to simplify the formula gini index in QIIME2? For example write in a R script.
|
|
2
|
75
|
November 1, 2024
|
|
Looking for Comprehensive Qiime2 Documentation
|
|
3
|
181
|
June 23, 2025
|
|
Request for Pre-trained SILVA V1–V3 Naive Bayes Classifier
|
|
2
|
104
|
June 18, 2025
|
|
classify-sklearn vs classify-consensus-vsearch - classification depth
|
|
2
|
172
|
June 13, 2025
|
|
Shotgun sequencing of Fungi - UNITE or KRAKEN2
|
|
1
|
135
|
June 11, 2025
|
|
Feature table and representative sequences for downstream analyses
|
|
1
|
48
|
June 11, 2025
|
|
PERMANOVA and DESeq2: Re-evaluating Covariates After Subsetting by Time Point
|
|
1
|
79
|
June 9, 2025
|
|
maarjAM database
|
|
3
|
222
|
June 6, 2025
|
|
Analysing with multiple public datasets
|
|
4
|
76
|
June 5, 2025
|
|
Qiime2 ConQuR Plugin for Batch Correction (or alternative)
|
|
2
|
176
|
June 4, 2025
|
|
Shotgun sequencing and Trimming
|
|
2
|
56
|
June 3, 2025
|
|
Can I run QIIME2 on de-multiplexed 5R 16S files?
|
|
1
|
73
|
June 3, 2025
|
|
Try to compare 16s and wgs with greengenes2
|
|
0
|
64
|
May 16, 2025
|
|
MAG filtering prior functional annotation
|
|
2
|
112
|
May 28, 2025
|
|
Using PCoA versus PCA
|
|
6
|
14304
|
May 23, 2025
|
|
Can trimming and dada 2
|
|
3
|
89
|
May 19, 2025
|
