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Shall I need to remove ASV with prevelance in one sample?
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4
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158
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August 8, 2025
|
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Exclude significant results from betadisper from adonis2?
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0
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139
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July 19, 2025
|
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16S SRNA
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1
|
108
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August 2, 2025
|
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Cage effect ANOVA
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11
|
357
|
July 31, 2025
|
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GSR database in QIIME2?
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2
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79
|
July 28, 2025
|
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Problems with Taxonomic Assignment
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1
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70
|
July 25, 2025
|
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Why is there a size difference between my PCR product (~400 bp) and the final representative sequence (313 bp)?
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4
|
306
|
July 22, 2025
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Sequence and taxonomy files for Silva v138.2
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2
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257
|
July 21, 2025
|
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Beginner's Project
|
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2
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70
|
July 21, 2025
|
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Recommended Step for Merging Metagenomics Datasets
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1
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97
|
July 16, 2025
|
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Quality control for shotgun metagenomics
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2
|
734
|
March 13, 2024
|
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Merging qiime2 sample metadata with exterior taxonomic classifications
|
|
1
|
68
|
July 13, 2025
|
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PR2: Division vs. Phylum
|
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1
|
113
|
July 11, 2025
|
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Is it necessary to separate ASVs classified at genus level into their respective sequences in ANCOMBC2 or other differential abundance analysis?
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2
|
202
|
July 8, 2025
|
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Transforming Alpha Diversity Metrics for Mixed Effects Modeling
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2
|
83
|
July 8, 2025
|
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Best workflow for samples with high off-target (host) amplification
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|
7
|
188
|
July 8, 2025
|
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High percentage of unassigned reads (metagenomics)
|
|
6
|
257
|
July 3, 2025
|
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SILVA trained version for V3-V4 amplicon using 341F/785R primers
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3
|
365
|
July 2, 2025
|
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Looking for Sensible Qiime2 CLI Aliases
|
|
1
|
92
|
July 1, 2025
|
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How to simplify the formula gini index in QIIME2? For example write in a R script.
|
|
2
|
101
|
November 1, 2024
|
|
Looking for Comprehensive Qiime2 Documentation
|
|
3
|
192
|
June 23, 2025
|
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Request for Pre-trained SILVA V1–V3 Naive Bayes Classifier
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2
|
109
|
June 18, 2025
|
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classify-sklearn vs classify-consensus-vsearch - classification depth
|
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2
|
182
|
June 13, 2025
|
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Shotgun sequencing of Fungi - UNITE or KRAKEN2
|
|
1
|
144
|
June 11, 2025
|
|
Feature table and representative sequences for downstream analyses
|
|
1
|
54
|
June 11, 2025
|
|
PERMANOVA and DESeq2: Re-evaluating Covariates After Subsetting by Time Point
|
|
1
|
89
|
June 9, 2025
|
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maarjAM database
|
|
3
|
260
|
June 6, 2025
|
|
Analysing with multiple public datasets
|
|
4
|
79
|
June 5, 2025
|
|
Qiime2 ConQuR Plugin for Batch Correction (or alternative)
|
|
2
|
183
|
June 4, 2025
|
|
Shotgun sequencing and Trimming
|
|
2
|
58
|
June 3, 2025
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