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Request for Bioinformatics Support: Alpha and Beta Diversity Analyses for 16S rRNA Nanopore Sequencing Data
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0
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103
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May 5, 2025
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Optimising spike-in quantity using qPCR
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1
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84
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May 1, 2025
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How does the sklearn classifier handle ambiguous bases?
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3
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92
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May 28, 2025
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SILVA 138.2 genus names with strain code
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3
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127
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April 24, 2025
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Alpha diversity with filtered raw data or unfiltered raw data
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1
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99
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April 24, 2025
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Density plots along PCoA plot axes?
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7
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121
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April 23, 2025
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Getting oxygen requirements for bacterial species identified by 16S sequencing
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4
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306
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April 23, 2025
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taxonomy mitochondria vs D_4__Mitochondria
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2
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46
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April 22, 2025
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PERMANOVA and PERMDISP and pairwise
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7
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385
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April 21, 2025
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still default behavior after setting TMPDIR
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8
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141
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May 17, 2025
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Best analysis to do after CCA?
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1
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59
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April 14, 2025
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Alpha diversity without rarefaction
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2
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118
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April 10, 2025
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Best Studies for Genus Accuracy of 16S Sequencing
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5
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145
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April 7, 2025
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How can I perform learnErrors on a subset of reads?
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3
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63
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April 7, 2025
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NCBI: How to link BioSample to BankIt submission?
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0
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49
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March 28, 2025
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QIIME in clinical hospital and commercial laboratory settings
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11
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187
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April 4, 2025
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Visualizing ANCOMBC data over time
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3
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206
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April 1, 2025
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QIIME2 microbiome analysis and python version
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2
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83
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March 29, 2025
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Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
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8
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262
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March 27, 2025
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TEF1 metabarcoding: Should I use BLAST or VSEARCH instead of Naive Bayes?
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4
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124
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March 26, 2025
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Investigating the Impact of Travel-Induced Environmental Shifts on Microbiome Stability: A Call for Collaborative Field Studies and Methodological Insights
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0
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59
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March 26, 2025
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DADA2 generated rep.seqs in R to QIIME2 for making use of the "qiime fragment-insertion sepp"
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1
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46
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March 25, 2025
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General or taxonomic level alpha diversity?
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2
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132
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March 24, 2025
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Reading the generated data.
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1
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33
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March 24, 2025
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Closed reference OTU picking of V3-V4 amplicon against full-length reference database
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3
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90
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March 21, 2025
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Question about analyzing different sample types
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3
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110
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March 20, 2025
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Contents of imported database
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6
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82
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March 18, 2025
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Missing species sequence on Greengenes2 2024.09
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2
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73
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March 18, 2025
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How important is it to remove spacers prior to DADA2 filtering trimming, etc?
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2
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60
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March 17, 2025
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ASV with missing taxonomic annotation
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2
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142
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March 11, 2025
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