How to download seven-number-summaries TSV directly

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1

Hi :smile:

I need your help. I'm trying to automate my workflow in qiime2, the step of viewing the demux summary is very hard to automate. A better option would be to deal with the TSV file directly, extract for example, when the position quality scores begin to drop at < 20.

I haven't figured out a way to download TSV files directly without having to do qiime tools view XYZ.qzv

Is there a way to obtain TSV files directly to parse in my pipeline without having to do the manual part of looking at the interactive plots which is useful for a quick glance but I can't get the details I want without zooming in and out. :frowning:

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2

Hello!
Yes, you can export or extract the data. Please check this tutorial.
You can also use "unzip" command in the terminal.

Best,

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