Hi
I need your help. I'm trying to automate my workflow in qiime2, the step of viewing the demux summary
is very hard to automate. A better option would be to deal with the TSV file directly, extract for example, when the position quality scores begin to drop at < 20.
I haven't figured out a way to download TSV files directly without having to do qiime tools view XYZ.qzv
Is there a way to obtain TSV files directly to parse in my pipeline without having to do the manual part of looking at the interactive plots which is useful for a quick glance but I can't get the details I want without zooming in and out.