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SILVA 138.2 genus names with strain code
|
|
3
|
140
|
April 24, 2025
|
|
Alpha diversity with filtered raw data or unfiltered raw data
|
|
1
|
130
|
April 24, 2025
|
|
Density plots along PCoA plot axes?
|
|
7
|
155
|
April 23, 2025
|
|
Getting oxygen requirements for bacterial species identified by 16S sequencing
|
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2
|
362
|
April 23, 2025
|
|
taxonomy mitochondria vs D_4__Mitochondria
|
|
2
|
65
|
April 22, 2025
|
|
PERMANOVA and PERMDISP and pairwise
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7
|
621
|
April 21, 2025
|
|
still default behavior after setting TMPDIR
|
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5
|
222
|
April 15, 2025
|
|
Best analysis to do after CCA?
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1
|
73
|
April 14, 2025
|
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Alpha diversity without rarefaction
|
|
2
|
153
|
April 10, 2025
|
|
Best Studies for Genus Accuracy of 16S Sequencing
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|
5
|
168
|
April 7, 2025
|
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How can I perform learnErrors on a subset of reads?
|
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3
|
76
|
April 7, 2025
|
|
NCBI: How to link BioSample to BankIt submission?
|
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0
|
53
|
March 28, 2025
|
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QIIME in clinical hospital and commercial laboratory settings
|
|
9
|
203
|
April 4, 2025
|
|
Visualizing ANCOMBC data over time
|
|
3
|
256
|
April 1, 2025
|
|
QIIME2 microbiome analysis and python version
|
|
2
|
95
|
March 29, 2025
|
|
Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
|
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8
|
301
|
March 27, 2025
|
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TEF1 metabarcoding: Should I use BLAST or VSEARCH instead of Naive Bayes?
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4
|
156
|
March 26, 2025
|
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Investigating the Impact of Travel-Induced Environmental Shifts on Microbiome Stability: A Call for Collaborative Field Studies and Methodological Insights
|
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0
|
61
|
March 26, 2025
|
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DADA2 generated rep.seqs in R to QIIME2 for making use of the "qiime fragment-insertion sepp"
|
|
1
|
53
|
March 25, 2025
|
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General or taxonomic level alpha diversity?
|
|
2
|
186
|
March 24, 2025
|
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Reading the generated data.
|
|
1
|
43
|
March 24, 2025
|
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Closed reference OTU picking of V3-V4 amplicon against full-length reference database
|
|
3
|
107
|
March 21, 2025
|
|
Question about analyzing different sample types
|
|
3
|
126
|
March 20, 2025
|
|
Contents of imported database
|
|
6
|
93
|
March 18, 2025
|
|
Missing species sequence on Greengenes2 2024.09
|
|
2
|
86
|
March 18, 2025
|
|
How important is it to remove spacers prior to DADA2 filtering trimming, etc?
|
|
2
|
70
|
March 17, 2025
|
|
ASV with missing taxonomic annotation
|
|
2
|
174
|
March 11, 2025
|
|
Dual-End Barcoding for 16S rRNA Primers: Using Golay Barcodes on Both Forward and Reverse Primers
|
|
4
|
148
|
March 10, 2025
|
|
How to download seven-number-summaries TSV directly
|
|
1
|
48
|
March 7, 2025
|
|
PCoA analysis Interpretation Doubt
|
|
3
|
100
|
March 6, 2025
|
