Hello, I am writing an essay about the QIIME open-source and interactive learning model.
I need confirmation that hospitals or commercial laboratories use QIIME to process 16S rRNA data for diagnosing and treating patients, rather than just for publishing scientific papers. Ideally, this confirmation should include a citation.
I understand that I can look up large-scale clinical studies using QIIME on Google Scholar. But I want a direct quote from some hospital or companies mentioning they use QIIME for their operation
Hi @forbesavila387, Thanks for reaching out.
A few quick links that might help you:
Does that get you the information that you need? If not, what else would help and can you let me know the timeline for your essay? Due to travel it may take a little while for me to provide additional detail.
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Dear Dr. Caporaso,
Thank you for the informative and prompt reply.
The information you provided is more than sufficient, it will help elevate the writing.
The deadline is 31st March 2025.
Maybe if you don't mind, I would like to ask your willingness so that I can cite this forum as citation (personal communication etc.).
Once again thank you for your prompt reply & safe travels.
Best regards
-FA
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Hi @forbesavila387, Yes, it's perfectly fine to cite the information I provided as personal communication. You can feel free to cite the forum as well, but note that the URLs are not guaranteed to be stable forever (we have no plans to change them, but just wanted to mention that).
Would love to hear more about your essay. Would you mind sharing it when it's published? A reply to this thread or a DM on the forum would be great.
Good luck!
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Dear Dr. @gregcaporaso ,
I am trying to submit it in Lasker 2025 essay contest (Essay Contest - Lasker Foundation). So I'm not sure it will be published or not (I think, only the top 5 get published).
Topic
Identify a specific innovation in education or training to help ensure a sustainable, inclusive, and successful future biomedical research workforce.
When I read the topic, I think the QIIME model of software distribution, tutorial, and forum embodies that the most.
Regarding the finalized essay I will submit it via the methods you recommend me~
Thank you for your time, it is a major help in writing the essay & have a great day.
Best regards
-FA
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Sounds great! I have some thoughts on other mechanisms of publication that I'd be happy to discuss with you if you're interested. For example, you may be able to submit as a pre-print or post to Zenodo, even if you don't intended to make it journal publication. Either of those would give you a formal citation that you could use (though neither would be a peer-reviewed article). Feel free to follow up by DM on the forum if this is of interest.
Dear Dr. @gregcaporaso
I have just submitted the essay to the Lasker Foundation for the 2025 Essay Contest.
First and foremost, I want to say thank you for your help and guidance during the writing process.
Although I'm interested in your suggestion for publication, entering the contest means I can't publish in any other medium.
However, if you want, I can send it to your personal email or DM you via the qiime2 forum.
Thank you for your time.
Best regards
-Forbes Avila
Good luck in the contest! Sure, I'd love to see the essay - forum DM would be great, if you don't mind. Thanks again for your interest in QIIME 2!
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Dear Dr. Caporaso
I could not find the DM function in the forum.
Thus, I'm sending it to you via your nau.edu email.
Thank you for your time & have a great weekend~
Best regards
-Forbes Avila
Got it, thanks for sharing @forbesavila387 - good luck with the contest!
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