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Is it valid to rename ASVs classified as ‘uncultivated’ as ‘unclassified’?
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9
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166
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March 5, 2025
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OTU Tables Relative Frequency to Relative Abundance
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9
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218
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March 4, 2025
|
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how to phylogenetically analyse 16S genes recovered from metagenome?
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2
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103
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March 3, 2025
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Testing ITS1 Pipeline: Finding mock communities or correcting ITSxpress error
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7
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164
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March 3, 2025
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choosing of sampling depth
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7
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186
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February 28, 2025
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Animals gene family
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1
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51
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February 26, 2025
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tutorial for merging different sequencing data in qiime2
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6
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183
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February 26, 2025
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Sequencing bacterial 16S amplicons and Fungal ITS amplicons from same soil samples using same indices
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2
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124
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February 26, 2025
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Identification of Acanthamoeba in 18S rDNA analysis
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1
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61
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February 24, 2025
|
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Recommended timepoints for soil microbiome studies?
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5
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95
|
February 19, 2025
|
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Code Review: Custom QIIME 2
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4
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74
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February 19, 2025
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Can MiSeq Reagent Kit v2 (500 cycles) be used to sequence V3-V4 region of bacterial 16S rRNA gene?
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4
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140
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February 19, 2025
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How to deal with multiple runs for one sample?
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8
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193
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February 18, 2025
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Nanopore Long Read Demultiplexed Full 16S rRNA Seq
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8
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1294
|
February 17, 2025
|
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Issue with Taxonomy Assignment Using Kraken and Custom Database (BOLD, Nemabiome) in QIIME2
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4
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369
|
February 14, 2025
|
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Uneven sample size, a need for rarefaction tool
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7
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223
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February 11, 2025
|
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Analysing merged sequences
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1
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75
|
February 9, 2025
|
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non-fungal sequences in ITS2 analyses
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3
|
188
|
February 8, 2025
|
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Unnasigned ASVs at lower taxonomic ranks can alter metrics of alpha and beta diversity that use the phylogenetical distance?
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2
|
63
|
January 30, 2025
|
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High presence of chloroplasts in V3-V4 16S rRNA amplification
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1
|
77
|
January 27, 2025
|
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loosing reads after dada2 filteration
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7
|
124
|
January 25, 2025
|
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Step by step metabarcoding in fungi
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2
|
109
|
January 19, 2025
|
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fastqc or similar tool to analyze and compile sequencing data quality
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|
3
|
321
|
January 16, 2025
|
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Database for soil metagenomic 16S: Phytopathogenic?
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0
|
46
|
January 14, 2025
|
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Venn Diagram Creation
|
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1
|
86
|
January 9, 2025
|
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Long read 16S amplicon Oxford Nanopore data
|
|
2
|
1330
|
December 21, 2024
|
|
Composition-aware correlation of ASVs from 2 different amplicons
|
|
3
|
80
|
December 20, 2024
|
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choice of fungal primers
|
|
13
|
7352
|
December 9, 2024
|
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Using ITSxpres with rescript and fit-classifier-naive-bayes
|
|
1
|
48
|
December 4, 2024
|
|
Collapse frequencies by relative abundance per sample
|
|
4
|
68
|
December 2, 2024
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