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PacBio ITS workflow - some questions
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4
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125
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September 9, 2026
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Why truncate with dada2 when ITSxpress is an option?
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16
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265
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August 17, 2026
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Plugin error from itsxpress: list index out of range
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10
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140
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August 13, 2026
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Request: DADA2 denoise-ccs without --p-front parameter
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2
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65
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August 4, 2026
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Can I create one OTU table from mixed ITS1, ITS2, and full ITS fungal datasets?
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5
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93
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May 6, 2026
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Issue with UNITE classifier for ITS1
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1
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95
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December 2, 2025
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ITSxpress Plugin error: "Missing sequence for record beginning on line 9"
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7
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93
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November 28, 2025
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Primer sequences still present in representative-sequences after running ITSxpress
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1
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79
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May 7, 2025
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Testing ITS1 Pipeline: Finding mock communities or correcting ITSxpress error
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7
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177
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March 3, 2025
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ITS extraction error - Missing sequence for record beginning on line 17
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48
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735
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February 24, 2025
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Error: QIIME 2 has no plugin/command named 'itsxpress'. Did you mean 'q2-itsxpress'?
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9
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653
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January 22, 2025
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Need help: plugin error from ITSxpress
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11
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320
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January 14, 2025
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ITSxpress performance in different ITS1 amplicons
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6
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276
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April 1, 2024
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Some issue about itsxpress2 plugin in QIIME2-202309
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3
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323
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December 11, 2023
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Plugin error from itsxpress:
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3
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239
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December 9, 2023
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ITS itsxpress trim-unmerged encounters problems
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1
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292
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September 13, 2023
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ITSxpress 2.0 in Qiime2023.2 with EMP data
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17
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1072
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August 11, 2023
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Plugin error from itsxpress: Missing sequence for record beginning on line 5
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2
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375
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July 11, 2023
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Not sure how to interpret this q2-itsxpress plugin error
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6
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794
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June 20, 2023
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ITS Plugin error from itsxpress
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1
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287
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March 23, 2023
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Too many reads lost in ITSxpress
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3
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534
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February 14, 2023
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hmmsearch (HMMER) failure during q2-itsxpress run
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8
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885
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February 1, 2023
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ITSxpress returned non-zero exit status 1
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1
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3797
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January 3, 2023
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Too many reads lost in ITSxpress trimming
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0
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284
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December 9, 2022
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Do i need to remove the primer sequences (cutadapt) before using ItSxpress for Fungal ITS data or the hmm matching and trimming can handle that for me?
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1
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326
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December 8, 2022
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ITS extraction after joining paired-end reads?
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2
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557
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October 13, 2022
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qiime itsxpress File too small
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1
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296
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October 11, 2022
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itsxpress - not fastq.gz format error
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11
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977
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October 6, 2022
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ITSxpress error: Missing sequence for record beginning on line ...
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3
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596
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September 9, 2022
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Error importing with q2-itsxpress
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8
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586
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August 29, 2022
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