Access Aldex2 Documentation

Library Support
1

Hello QIIME2 moderators,

I wanted to use Aldex2 for differential abundance testing. Many years ago I had reviewed the excellent tutorial by @jbisanz "Integrating QIIME2 for R and Data Visualization"

However, the link to q2-aldex leads to a 404-Not Found error.

I'm using QIIME version 2024.10. I assume if I wanted to use ALDEX I will also need to dowload QIIME2 version 2019.7. However, when I went to the QIIME2 documentation I could not find information on Aldex2 in the tutorials or plug-in documents. I also searched under version 2019.7.

Can someone let me know which version contains the documentation information for Aldex2 on QIIME? What are your thoughts on Aldex2 vs ANCOM-BC @jwdebelius for differential abundance analyses?

Thank you!

2

Hi @KBauer,

I suspect it's this link:
https://old-library.qiime2.org/plugins/q2-aldex2/24/

We're currently transitioning the library, and most plugins haven't made the trip over just yet.

3

Hi @ebolyen,

Has the Aldex2 plugin made it to the new library yet? I have only been able to find the old references.

Thanks!

4

Hey @esdaile,

We don't have Aldex2 on the new library right now; there's been limited developer bandwidth to get things up to date with the latest versions of QIIME 2, but this does remain a plugin of interest to us so it's possible that we'll be able to do this sometime in the future.