Hi everyone (but probably @cmartino),
Im trying to figure out how to interpret the outputs of gemelli, specifically the state and feature trajectories. My interpretation is that these are essentially the movement of the feataures and samples in some major factorization hyperspace but I’m not entirely sure what to do with that. For instance, if I have a before/during/after case where my responders all have increasing values along PC1 and I have increasing values along PC 1 with ASV 1, should the interpretation be that during treatment, responders have a relative increase* in ASV 1 (*given all the ALR “increase” assumptions?)
I tried checking the documentation and struggled to find an explanation of the output files.