Hi Everyone,
Recently Decontam functionality has been added to the QIIME2 platform under the q2-quality-control umbrella.
Below are links to two different tutorials for the added Decontam functionality. The first is how to run Decontam within QIIME2, and the second is how to run a specialized action called Decontam-Batches which is designed to help track down sources of contamination in experiments. At the top of each tutorial is a description of what the tutorial entails and how to interpret the results from each action.
These tutorials are very much a work in progress please feel free to reach out to me on the forum or at jrabasc@ncsu.edu if you have any further questions or feedback!
Best,
Jorden Rabasco