QIIME 2 Forum

Topic	Replies	Views	Activity
Fragment-insertion sepp running failed Technical Support fragment-insertion	41	576	April 20, 2024
No taxonomy assignment with pre-trained classifier User Support taxonomy	18	854	September 26, 2022
Error when applying qiime gneiss ols-regression on a covariate with 14 categories User Support	11	1074	October 20, 2018
Download All Kruskal-Wallis Results User Support	10	630	February 8, 2019
DADA2 ,trunc-len-r /f User Support dada2	16	901	January 21, 2024
Error to install qiime2-2022.11 with conda on Mac Technical Support install	12	1026	March 25, 2023
Sampling depth to include all sample User Support	10	1114	December 18, 2020
IonTorrent 16S Metagenomic Kit - Consensus feature table across V regions General Discussion feature-table , ion-torrent	9	657	March 17, 2023
"--i-tables" command not found User Support	9	1168	May 18, 2019
Two parameters in the Command User Support	9	1168	April 27, 2019
Demuz single-end Mismatched sequence ids User Support	9	1165	March 8, 2019
wget for qiime2 yml is not working Technical Support conda	10	1110	July 31, 2023
Error ' ' expected after ' " ' Technical Support import	10	1102	October 29, 2022
How to address multiple controls, in which a particular control relates to only one sample? User Support contaminant , filtering	10	1103	June 9, 2018
ImportError for miniconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/scipy/interpolate/dfitpack.cpython-38- x86_64-linux-gnu.so: failed to map segment from shared object after native install. Technical Support install	10	1097	December 8, 2022
qiime2 phylogenetic tree Technical Support	12	1007	July 8, 2022
Gneiss downloaded p-value .csv disagrees with interactive summary User Support gneiss	15	905	March 2, 2019
qiime tools import error User Support import	10	1091	December 29, 2020
importing repr_set.fasta file from QIIME1 into QIIME2-2019.7 User Support	9	1143	November 4, 2019
Statistics from de novo chimera removal User Support chimera	12	1000	May 11, 2020
Qiime2 and R downstream analysis General Discussion	10	1086	December 31, 2022
dada2 statistics - input reads less than expected User Support dada2	13	962	July 11, 2020
Visualization of large data sets is inadequate and needs optimization User Support barplot , pending-development	13	962	December 7, 2018
Plugin error from diversity rarefaction depth User Support pending-development , alpha-rarefaction	9	1137	April 15, 2018
Beta Diversity Profiling & Significance Testing User Support pcoa , tree , feature-table , taxonomy	12	997	December 2, 2022
Help with MetaData File and Alpha Rarefaction User Support	12	997	April 11, 2020
Sequence quality control and feature table construction_DADA2 commands giving Error User Support dada2	14	928	August 27, 2018
Facing merging problem in dada2-plugin User Support feature-table , dada2 , merge	16	490	July 13, 2023
import data into qiime User Support	13	959	October 27, 2023
[ErrNo 17] file exists during classify User Support feature-classifier	10	1081	December 3, 2018
Taxonomic Analysis User Support q2studio	10	1081	April 29, 2018
Rescript evaluate-fit-classifier - Plugin error from rescript: Passing a set as an indexer is not supported. Use a list instead. Technical Support	12	314	July 27, 2024
Can anyone help me with data from sequencing center User Support import	11	1033	November 2, 2022
I can't visualise demux_viz.qzv file on QIIME view Technical Support visualization	11	1030	December 7, 2021
feature_ids must be present as tip names Technical Support import	13	949	December 5, 2020
Ec2 installation issue User Support install	13	947	April 28, 2018
"Killed" Error When Running classify-sklearn in QIIME 2 Technical Support unite	9	199	April 23, 2025
Is unrestricted taxonomic assignment better for estimating numbers of genera? General Discussion taxonomy , feature-classifier	10	599	September 27, 2023
Qiime tools import: paired end file User Support	9	1112	November 16, 2018
'ids_to_keep' must contain at least one ID Technical Support	9	1110	May 8, 2021
Error msg from importing the data with the manifest csv, Technical Support	9	1104	July 21, 2019
Deblur error : all of the sequences are artifacts like PhiX or adapter. User Support deblur , quality-filter	14	901	November 26, 2021
Semantic type SampleData does not have a compatible directory format. Technical Support import	9	1103	September 8, 2022
Error was encountered while running DADA2 with V3-V4 data User Support	18	800	April 7, 2022
Correlation analysis Library Support	10	1051	March 25, 2019
Read length selection during extraction from reference databases General Discussion	11	1004	February 24, 2020
DADA2 simply won't work User Support	9	347	April 23, 2024
In 2020: An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more. User Support	10	1045	April 26, 2020
Differential abundance analysis User Support	10	1044	September 13, 2020
Qiime2 2017.9 works but 2018.2 doesn't on my server User Support install	13	925	April 8, 2018