|
QIIME2 non-chimeric reads
|
|
3
|
99
|
November 10, 2025
|
|
Chimeras - dada2 settings, and optimal PCR polymerase?
|
|
1
|
55
|
October 13, 2025
|
|
Chimera removal dilemma in 16S V3–V4: necessary when using Kraken2/Bracken?
|
|
8
|
275
|
September 26, 2025
|
|
Effect of primer removal on chimera detection in DADA2
|
|
8
|
272
|
August 25, 2025
|
|
Low percentage of non-quimeric reads after dada2
|
|
3
|
141
|
May 14, 2025
|
|
DADA2 denoise is removing more than 50% of the data
|
|
4
|
568
|
March 10, 2023
|
|
Error with dada2 (return code 1) isBimeraDenovoTable
|
|
7
|
557
|
November 17, 2021
|
|
running uchime-ref after deblur -- general questions and parameters
|
|
9
|
939
|
September 13, 2021
|
|
Used degenerate primers for sequencing, concerned that my reads are being confused as chimeras
|
|
1
|
975
|
September 1, 2021
|
|
DADA2：low non-chimeric
|
|
1
|
896
|
August 31, 2021
|
|
What are the criteria for choosing the optimal "--p-min-fold-parent-over-abundance" parameter in dada2?
|
|
1
|
825
|
July 9, 2021
|
|
high chimera rate in dada2
|
|
3
|
4735
|
October 17, 2020
|
|
Do I need to remove chimera with qiime vsearch uchime-denovo after denosing by Dada2
|
|
6
|
2345
|
June 13, 2020
|
|
Losing reads as chimeras
|
|
10
|
3481
|
May 18, 2020
|
|
DADA2 Denoise: Different Chimera parameters same output
|
|
12
|
1995
|
April 20, 2020
|
|
Statistics from de novo chimera removal
|
|
5
|
1034
|
April 10, 2020
|
|
Up to 97% of sequences being removed by filtering/denoising in DADA2
|
|
4
|
1607
|
December 20, 2019
|
|
DADA2 denoise-single chimera removal inconsistence
|
|
16
|
2760
|
August 2, 2019
|
|
fasta file analysis in QIIME2
|
|
9
|
4848
|
May 10, 2019
|
|
Too many chimeras in my samples?
|
|
2
|
1623
|
April 15, 2019
|
|
Chimera check in dada2 and with vsearch uchime-denovo
|
|
3
|
2933
|
May 28, 2018
|
|
Plugin error: when doing the de novo chimera checking
|
|
4
|
670
|
February 22, 2018
|
|
Chimera check questions
|
|
9
|
6668
|
January 5, 2018
|
|
Chimera separate filtering
|
|
2
|
1164
|
December 22, 2017
|
|
Estimated time for DADA2 process
|
|
8
|
4192
|
December 22, 2017
|
|
Identifying and filtering chimeric feature sequences with vsearch
|
|
0
|
5241
|
December 17, 2017
|
|
Problem with DADA2
|
|
2
|
1379
|
October 2, 2017
|
|
Chimera checking and bar plots
|
|
3
|
1425
|
July 10, 2017
|
