QIIME 2 Forum

Topic	Replies	Views	Activity
qiime2 to qiime1 method User Support	10	1213	January 4, 2020
Problem viewing Emperor plot with qiime tools view command and view.qiime2.org User Support	10	1212	September 20, 2018
Issue importing Paired end sequences with quality Technical Support fastq-manifest , import	11	1155	December 9, 2021
(1/1) Invalid value for '--i-table': 'table.qza' is not a QIIME 2 Artifac (.qza) Technical Support	13	1067	July 23, 2023
[Errno 38] Function not implemented using feature-classifier but I need and extra disk User Support install , taxonomy	10	1203	August 26, 2018
Modfying Virtual Metabolic Human diets to be suitible for MICOM Library Support micom	13	599	March 17, 2024
sequence length increase after pair-end merge? User Support	9	1256	March 30, 2021
Cutadapt issue; primers still present after multiple tries User Support	10	1196	December 12, 2022
Yet another question regarding OTU clustering User Support vsearch	10	1196	March 29, 2019
installation conflict: QIIME 2 v2024.5 and q2-greengenes2 Technical Support	16	962	August 22, 2024
Reverse Reads throwing Taxa Histogram off User Support taxonomy , dada2	26	763	July 30, 2023
importing reference data sets User Support	11	1144	June 14, 2019
Using imported R table for analysis using ANCOM User Support	10	1192	January 12, 2020
ISME-Latinamerica 2021 Discussion Thread User Support workshop	17	930	August 3, 2021
Pairwise-differences test returns weird value User Support longitudinal	9	1243	September 10, 2018
DADA2 denoise-paired error: R (return code -9) User Support dada2	9	1242	October 8, 2018
Obtaining sequences per biological sample - version 2 User Support	14	1014	April 26, 2020
Feature classifiier consensus vsearch - key error User Support	9	1241	August 4, 2018
Technical problem while installing Qiime2 on windows10 because of Qiime2 certificate Technical Support	25	769	September 30, 2022
Error with export demux.qzv from demux-paired-end.qza Technical Support	10	1182	December 4, 2020
NaNs/non symmetrical data in Table resulting from qiime feature-table filter-samples Technical Support	10	1182	November 2, 2020
Some samples are classified with only kingdom-level User Support feature-classifier	9	1235	October 6, 2018
Installed qiime2 but getting SyntaxError: invalid syntax error Technical Support	10	1177	January 16, 2021
Annotate Bacterial Genes Amplicon data User Support feature-classifier , taxonomy , dada2	12	1079	September 21, 2021
Relative_Ancom_analysis User Support ancom , taxonomy	11	1123	December 4, 2020
Issue with Rcpp and DADA2 Technical Support	9	1228	October 2, 2021
How to identify the feature ID in Gneiss User Support gneiss	13	1035	April 28, 2018
Taxa collapse shows too general taxonomic assignations User Support its , unite , taxonomy	12	339	July 21, 2024
Using RESCRIPt to create an amplicon specific classifier with NCBI data Library Support rescript , feature-classifier	9	1222	September 28, 2021
How to find most abundant phyla and family in different groups of samples? User Support	15	965	November 29, 2019
HOW TO integrate PICRUST ON QIIME2 plugin ? Library Support	9	1219	October 24, 2021
Qiime2 Python API unifrac dist matrix error: FileNotFoundError: [Errno 2] No such file or directory: 'ssu' Technical Support	14	994	October 9, 2023
Illumina BaseSpace QIIME 2 Other Bioinformatics Tools	9	1210	June 23, 2018
Is there qiime2 function to merge biological sample with similar feature/group? Technical Support metadata	16	926	November 6, 2021
Clustering taxonomy sequences User Support taxonomy	9	1208	September 4, 2022
error while running dada2 denoise Technical Support dada2	10	647	November 6, 2023
Problem creating QIIME 2 file extension using the MiSeq Dataset without Barcode User Support import	11	1101	April 7, 2018
Absolute number of species or features per taxa per sample User Support	14	984	July 31, 2022
RDP database in qiime2 Technical Support taxonomy	10	1147	May 24, 2021
Creating a V3 classifier killed. Technical Support rescript , taxonomy , feature-classifier	9	1202	February 12, 2021
No reads using demux on version 2019.10 Technical Support	13	1012	February 24, 2020
Trim length and q20, qza values error User Support	11	344	December 23, 2023
Plugin error from fragment-insertion User Support	10	1137	January 8, 2019
Error when runnin gneiss ols-regression User Support	17	888	December 17, 2018
A few general question about qiime2 General Discussion	11	1083	July 10, 2019
Plugin error from diversity: got an unexpected keyword argument 'procrustes' User Support diversity	11	1083	October 30, 2018
How to fix mix-orientation reads User Support	9	1186	August 9, 2020
RE: Error: Plugin error from diversity Technical Support	13	1002	October 12, 2021
What is a normal # of features from dada2 output User Support dada2	11	1082	October 12, 2019
Problem Analyzing demultiplexed file User Support	12	1039	June 22, 2020