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Almost all Reads are unclassified - custom 18S V4 classifier
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11
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62
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April 24, 2025
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SILVA 138.2 genus names with strain code
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3
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20
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April 24, 2025
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taxonomy mitochondria vs D_4__Mitochondria
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2
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16
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April 22, 2025
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QIIME 2 Meta-Analysis of Rhizosphere Microbiome with Mixed V3-V4/V4 Data: Best Practices for Downstream Analysis
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13
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212
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April 17, 2025
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Rescript get-ncbi-data MemoryError
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5
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24
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April 13, 2025
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biom add-metadata: Error in biom file while adding Taxonomy
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3
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8
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April 7, 2025
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alpha and beta diversity
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2
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20
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April 6, 2025
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Specific taxa abundance
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4
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46
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April 2, 2025
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low proportion of identified ITS - OTU features
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2
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46
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March 28, 2025
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Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
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8
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79
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March 27, 2025
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TEF1 metabarcoding: Should I use BLAST or VSEARCH instead of Naive Bayes?
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4
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39
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March 26, 2025
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Original formating of BOLD data
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2
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31
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March 25, 2025
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SILVA vs PR2 database using qiime2
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1
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36
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March 19, 2025
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Contents of imported database
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6
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22
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March 18, 2025
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Issue with Taxonomic Classification Greengene2 for 16S V4 region - Unassigned data
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6
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64
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April 17, 2025
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Unable to find all taxon as a result of taxanomic analysis
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3
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25
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April 13, 2025
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ASV with missing taxonomic annotation
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2
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40
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March 11, 2025
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pre-trained UNITE ITS classifiers for QIIME 2024.10 (and older!)
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9
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6555
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March 9, 2025
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Importing COI data from BOLD
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3
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22
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April 9, 2025
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Is it valid to rename ASVs classified as ‘uncultivated’ as ‘unclassified’?
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9
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38
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March 5, 2025
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Greengenes2 2024.09
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3
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1704
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March 3, 2025
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how to phylogenetically analyse 16S genes recovered from metagenome?
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2
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44
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March 3, 2025
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Taxonomy file has only 30 features
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3
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31
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April 3, 2025
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Big data analysis in QIIME2: how to obtain the level-7.csv
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2
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27
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March 22, 2025
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Taxonomic Classification Only Reaching Genus Level (6) – Need Help with Deeper Classification
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4
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110
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March 21, 2025
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Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt
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24
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58044
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February 8, 2025
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Impact of number of bootstraps on RDP classification
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2
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44
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March 7, 2025
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classifying sequences-
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7
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48
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February 21, 2025
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Filtering eukaryotes from SILVA database
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4
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36
|
February 17, 2025
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qiime2 feature-classifier fit-classifier-naive-bayes KILLED
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2
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35
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February 17, 2025
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