Topics tagged filtering

Topic	Replies	Views	Activity
Filter specific ASVs from feature table User Support filtering , feature-table	2	86	April 20, 2024
DADA2, odd results from denoising stats (varying input passed filter, low number of reads, low % of input merged and ASVs) User Support filtering , dada2	4	188	February 29, 2024
Abnormal high percentage of unclassified bacteria User Support filtering , demux , taxonomy , feature-table , dada2 , feature-classifier , diversity	2	219	February 12, 2024
Error message after using ReSCRIPT for filtering for homopolymers Technical Support filtering , rescript	5	166	December 23, 2023
Removal of mitochondria and chloroplast - filter sequence vs filter taxonomy User Support filtering	7	437	November 18, 2023
Confirmation on code that removes Homopolymers User Support filtering	4	314	September 14, 2023
Error with filter-features-conditionally on picrust2 outputs Community Plugin Support filtering , feature-table , picrust	3	262	August 10, 2023
Getting low feature counts while using dada2 plugin User Support filtering , dada2 , feature-table , filter-features	18	324	June 23, 2023
Filtered OTU table using spike-in mock community to get actual read count User Support filtering	6	259	May 21, 2023
DADA2: losing a lot of reads User Support filtering , dada2	7	466	April 13, 2023
LOW percentage of input merged User Support taxonomy , dada2 , feature-classifier , deblur , metadata , import , install , demux , filtering	5	440	March 27, 2023
Filtering Samples in a Metabarcoding Dataset by Source Without Restarting the Pipeline User Support filtering	2	162	March 21, 2023
How to filter out contamination at samples User Support filter-features , filtering , feature-table , taxonomy	2	486	February 18, 2023
Is my DADA2 outputs nomarl? User Support filtering , import , dada2	3	361	January 16, 2023
Filtering phyloseq object by otu id instead of the target level Other Bioinformatics Tools filtering , phyloseq , feature-table	1	583	October 28, 2022
How to find sample IDs from publicly available fastq.gz General Discussion filter-features , filtering	3	255	August 26, 2022
Qiime filter feature table by sequences Technical Support filtering , feature-table	3	489	September 19, 2022
filtering with metada doesn't work User Support filter-samples , filtering	10	539	July 29, 2022
silva138 16S database contains eukaryota after filtering User Support silva , filtering	3	1299	May 30, 2022
Results after taxonomy filtering User Support filtering	2	261	May 29, 2022
Importing Multiplexed Paired End Sequence With Adaptors --> Demultiplexed Sequences User Support silva , 16s , cutadapt , multiplexed , metadata , filtering , feature-classifier , import , demux	4	1082	December 24, 2021
DADA2 error (same error for every try) Technical Support truncate , paired-end , filtering , trim , install , dada2	2	596	July 29, 2021
What are the criteria for choosing the optimal "--p-min-fold-parent-over-abundance" parameter in dada2? User Support chimera , filtering , dada2	2	678	August 10, 2021
Problems Creating a Compatible Open Reference OTU Table for PICRUSt User Support feature-table , filtering	2	540	July 17, 2021
Filtering output sequences below a certain length User Support filtering	2	1010	May 1, 2021
How to retain only species or genus level in feature table User Support filtering , feature-table	3	1211	April 2, 2021
Rescript filter-taxa error Community Plugin Support rescript , filtering	3	830	March 20, 2021
Issue filtering multiple specific taxa out of feature table User Support filtering , filter-features	5	1428	March 20, 2021
differencial abundance with ANCOM Technical Support filtering , filter-features , feature-table , taxonomy , feature-classifier , demux , dada2	4	708	March 16, 2021
dada2 trim and trunc values determination after paired end demultiplex General Discussion filtering , feature-table , demux , dada2	4	560	February 10, 2021