Topics tagged vsearch

Topic	Replies	Views	Activity
Sir, there's no fly in my digital soup. what gives? General Discussion vsearch	23	2732	January 4, 2019
Metaphlan2 vs vsearch for fungal metagenomic shotgun sequences User Support vsearch , fungi , fastq	9	2156	December 21, 2018
Qiime2 vsearch join PE reads question User Support vsearch	2	570	December 8, 2018
Dealing with non-oriented amplicon libraries User Support deblur , vsearch	5	1555	December 3, 2018
Default parameters on vsearch join-pairs User Support deblur , joining , vsearch	4	3404	November 19, 2018
Vsearch dereplicate seqs - list index out of range User Support feature-table , fasta , vsearch , dereplicate	8	1723	November 2, 2018
When clustering ASVs from deblur with VSEARCH, is it possible to know the membership of resulting clusters? User Support vsearch	7	2135	October 26, 2018
Estimating memory needed for vsearch dereplication? User Support vsearch	3	408	October 2, 2018
Output problem from 'qiime vsearch cluster-feature-closed-reference' User Support vsearch	5	783	September 29, 2018
Closed-reference otu picking from fastq file? User Support import , taxonomy , otus , vsearch , fastq	4	684	September 14, 2018
Plugin error from vsearch: Incorrect number of fields detected on line 2. Should be exactly 18 User Support plugin-development , vsearch	12	836	August 27, 2018
Create FeatureData[Sequence] User Support vsearch	2	2163	August 7, 2018
Missing sequence data in FASTQ record User Support vsearch , cutadapt	2	1441	July 23, 2018
Chimera check in dada2 and with vsearch uchime-denovo User Support dada2 , chimera , vsearch	6	2653	June 28, 2018
Clustering of amplicon variants does not change the cluster ID? User Support dada2 , taxonomy , feature-table , vsearch	9	626	May 4, 2018
Error from vsearch join-reads: exit code 1 User Support joining , vsearch	18	1573	April 23, 2018
Vsearch cluster-features-closed-reference error User Support vsearch , closed-reference	3	1600	March 31, 2018
Possible to set '--fasta_width 0' for consistency with other plugins? Ideas and Suggestions pending-development , vsearch	1	460	February 27, 2018
Qiime vsearch join-pairs error User Support paired-end , joining , vsearch	5	2368	March 27, 2018
‘reference_sequences’ is not a subtype of FeatureData[Sequence] User Support taxonomy , vsearch , closed-reference	3	1647	March 26, 2018
Plugin error: when doing the de novo chimera checking User Support chimera , vsearch	5	597	March 26, 2018
Combining Sequencing Runs for Open Reference OTU Clustering User Support qiime1-data , vsearch	7	1519	March 25, 2018
KeyError: Identifier reported in taxonomic search results, but not reference taxonomy User Support vsearch	8	2282	March 16, 2018
Vsearch dereplicate seqs error User Support pending-development , vsearch	5	999	March 16, 2018
Clustering sequences into OTUs using q2-vsearch Tutorials tutorial , otus , vsearch	1	16400	May 1, 2018
Low level taxonomic assignment when using open-reference clustering User Support feature-classifier , taxonomy , otus , vsearch	4	1680	March 12, 2018
Open-reference clustering; difference in output files User Support otus , vsearch	3	982	March 4, 2018
Issue with generate rep-seqs-dada2.qza file User Support dada2 , vsearch	5	1187	March 1, 2018
Converting .qza to .qzv files for visualization in vsearch cluster-features-closed-reference User Support summarize , vsearch , tabulate-seqs	5	4313	February 23, 2018
Qiime2 issue: Going from deblur to closed ref User Support vsearch , closed-reference	15	1428	February 23, 2018