Possible to set '--fasta_width 0' for consistency with other plugins?

Ideas and Suggestions
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1

I used the uchime-denovo command from the vsearch plugin in a recent workflow and it identified additional chimeras beyond DADA2. Nice. However, I ran into a hiccup when exporting nonchimeras.qza to a fasta file in that the sequences were broken across 80 character lines instead of using a single line. Not a big problem, but it would be nice if the format was either set to ‘–fasta_width 0’ to be consistent with DADA2 or inherited from the input .qza.

Thanks!
Chris

2 Likes
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Thanks for the suggestion @Chris_Hemmerich! I opened up an issue here to track the development of this feature. Thanks, and stay tuned! :t_rex: