Topics tagged vsearch

Topic	Replies	Views	Activity
vsearch closed reference OTU picking error: No matches were identified to reference_sequences Technical Support vsearch	4	1265	November 17, 2019
using database indexing for vsearch Technical Support feature-classifier , vsearch	10	2101	November 4, 2019
Vsearch plugin error for close reference classification Technical Support taxonomy , vsearch	3	632	November 4, 2019
Dada2: Losing reads at merging step User Support dada2 , vsearch , v3v4	2	736	October 28, 2019
How to retain 'Unmatched' features in barplots (as 'Unassigned') ? User Support vsearch , taxa , barplot	6	2159	November 23, 2019
Unmatched sequences percentage from vsearch User Support vsearch	4	1202	November 22, 2019
vsearch clustering and feature classifiers User Support feature-classifier , vsearch , closed-reference	3	1038	October 28, 2019
plugin error from vsearch: No matches were identified to reference_sequences. User Support vsearch	15	1801	July 21, 2019
Yet another question regarding OTU clustering User Support vsearch	10	1200	March 29, 2019
Sir, there's no fly in my digital soup. what gives? General Discussion vsearch	23	2946	January 4, 2019
Metaphlan2 vs vsearch for fungal metagenomic shotgun sequences User Support vsearch , fungi , fastq	9	2440	December 21, 2018
Qiime2 vsearch join PE reads question User Support vsearch	2	600	December 8, 2018
Dealing with non-oriented amplicon libraries User Support deblur , vsearch	5	1713	December 3, 2018
Default parameters on vsearch join-pairs User Support deblur , joining , vsearch	4	3627	November 19, 2018
Vsearch dereplicate seqs - list index out of range User Support feature-table , fasta , vsearch , dereplicate	8	1803	November 2, 2018
When clustering ASVs from deblur with VSEARCH, is it possible to know the membership of resulting clusters? User Support vsearch	7	2401	October 26, 2018
Estimating memory needed for vsearch dereplication? User Support vsearch	3	452	October 2, 2018
Output problem from 'qiime vsearch cluster-feature-closed-reference' User Support vsearch	5	822	September 29, 2018
Closed-reference otu picking from fastq file? User Support import , taxonomy , otus , vsearch , fastq	4	724	September 14, 2018
Plugin error from vsearch: Incorrect number of fields detected on line 2. Should be exactly 18 User Support plugin-development , vsearch	12	929	August 27, 2018
Create FeatureData[Sequence] User Support vsearch	2	2349	August 7, 2018
Missing sequence data in FASTQ record User Support vsearch , cutadapt	2	1560	July 23, 2018
Chimera check in dada2 and with vsearch uchime-denovo User Support dada2 , chimera , vsearch	6	2902	June 28, 2018
Clustering of amplicon variants does not change the cluster ID? User Support dada2 , taxonomy , feature-table , vsearch	9	671	May 4, 2018
Error from vsearch join-reads: exit code 1 User Support joining , vsearch	18	1740	April 23, 2018
Vsearch cluster-features-closed-reference error User Support vsearch , closed-reference	3	1697	March 31, 2018
Possible to set '--fasta_width 0' for consistency with other plugins? Ideas and Suggestions pending-development , vsearch	1	506	February 27, 2018
Qiime vsearch join-pairs error User Support paired-end , joining , vsearch	5	2504	March 27, 2018
‘reference_sequences’ is not a subtype of FeatureData[Sequence] User Support taxonomy , vsearch , closed-reference	3	1764	March 26, 2018
Plugin error: when doing the de novo chimera checking User Support chimera , vsearch	5	655	March 26, 2018