Topics tagged biom

Topic	Replies	Views	Activity
How to import a BIOM file containing sequences? Technical Support import , biom , sequences	6	423	March 6, 2024
Conversion of biom to tsv not working Other Bioinformatics Tools biom , taxonomy	11	644	January 24, 2024
Keep ASV IDs when converting to relative abundance General Discussion biom , feature-table , relative-frequency	6	1174	April 5, 2023
How to create a Venn diagram from core-feature and from biom table? User Support biom , core-features	3	868	February 25, 2023
Error message for Biom Convert Other Bioinformatics Tools biom	6	780	August 7, 2022
Error in importing feature table in qiime User Support import , biom , feature-table	2	312	August 3, 2022
Exporting .qza file from Qiime2 that is compatible with BugBase User Support import , biom , bugbase	11	790	July 10, 2022
Exporting feature table with taxonomy added not working Other Bioinformatics Tools biom , export , taxonomy , feature-table	2	1196	June 22, 2022
converting text file to biom file issue Other Bioinformatics Tools import , biom , taxonomy , feature-table	8	2449	March 1, 2022
Issues with the Qiime2BugBase worflow User Support biom , bugbase	1	330	January 14, 2022
Error exporting and modifying biom Other Bioinformatics Tools biom	0	586	December 2, 2021
Issue with using summarize_otu_distributions.py (from Earth Microbiome Project) on biom table exported from Qiime2 Other Bioinformatics Tools biom , export	4	706	October 29, 2021
Duplicate taxon names after merging biom tables User Support biom , feature-table , merge	3	681	May 29, 2021
Biom export option that appends taxonomic assignments to the feature table Ideas and Suggestions biom , export , taxonomy	4	2767	October 24, 2017
BIOM conversion to tsv Other Bioinformatics Tools biom , feature-table , otus , tsv	2	1092	November 3, 2020
Converted biom table does not contain taxonomy Other Bioinformatics Tools biom , taxonomy	2	1719	March 20, 2020
Output counts and taxonomy to biom Other Bioinformatics Tools biom	1	840	February 11, 2020
error when running 'biom convert' Other Bioinformatics Tools biom	7	1541	February 10, 2020
assign metadata to taxonomy.tsv User Support biom , export , taxonomy	5	916	February 4, 2020
How to get a BIOM table with QIIME 2 Other Bioinformatics Tools biom , taxonomy , feature-table	3	5978	November 26, 2019
HDF to JSON filtering of samples Other Bioinformatics Tools biom	7	1468	October 16, 2019
How to combine Feature Table with the taxonomy class Other Bioinformatics Tools biom	5	6079	October 1, 2019
Exporting qiime2 biom files with metadata? Other Bioinformatics Tools biom , taxonomy	3	1967	September 23, 2019
h5py error in biom convert Other Bioinformatics Tools biom , feature-table	2	1072	September 18, 2019
Feature Table Exports User Support biom , export	3	3191	August 31, 2019
Export to "classic" biom Other Bioinformatics Tools biom	0	1279	May 9, 2019
%s does not appear to be a BIOM file! Other Bioinformatics Tools biom	1	1296	April 30, 2019
Get fully annotated `.biom` tables from Qiime 2 to Qiime 1 (and e.g. Phyloseq) Community Contributions biom , qiime1	2	1881	April 8, 2019
Why does biom-convert save a JSON file when --to-hdf5 is passed as an option? Other Bioinformatics Tools biom , taxonomy , tsv	3	2486	March 8, 2019
MemoryError when i convert .biom to .txt Other Bioinformatics Tools biom	1	1015	December 11, 2018