I have followed this tutorial but when I try to convert the table-with-taxonomy.biom to a tsv file I get an error message saying;
KeyError: "Unable to open object (object 'ids' doesn't exist)"
I searched on the biom format page https://biom-format.org/index.html for a solution to this but can't find any answers there.
edit: I updated biom with "conda install -c bioconda biom-format" and it work!
Thanks for your help.