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Issue with SILVA 138.2 and RESCRIPt Compatibility
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2
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519
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September 12, 2024
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Seperating 16S, 18S, ITS, COI and chloroplast sequences
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3
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131
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September 12, 2024
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Is there a way to use files from Nanopore in Qiime2 ?
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5
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1791
|
September 11, 2024
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Arbitrary ASV fragment placement in Greengenes2
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0
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158
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September 6, 2024
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Create an ASV table using fasta sequences
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11
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295
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September 6, 2024
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Unclassified at the phylum level
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5
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326
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September 4, 2024
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What laptop does qiime2 run on
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3
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91
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September 2, 2024
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Manually Adding Positive Controls to classifier or reference database
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4
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533
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August 30, 2024
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Associate changes in taxa relative abundances (for all taxa) with calculated changes of continuous metadata variables
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5
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353
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August 29, 2024
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Best Discussion Forum for Greengenes 2?
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7
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222
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August 28, 2024
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Database With Best Accuracy at Genus Level for Human Microbiome?
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8
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360
|
August 28, 2024
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How to choose between full-length Greengenes or SILVA for 16s rRNA V1-V2 analysis with qiime2 pipeline?
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1
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247
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August 27, 2024
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Specificity and Sensitivity at Different Abundances?
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3
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59
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August 24, 2024
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Alpha Diversity q2-longitudinal question
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2
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78
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August 23, 2024
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analysing Eukaryota sequences
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2
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41
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August 22, 2024
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Handling Non-Merging Paired-End 803f-1392r Amplicon Sequences in QIIME 2 for ASV Generation
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7
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99
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August 21, 2024
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Which fungal marker use to quantify fungal population via qPCR?
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4
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118
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August 21, 2024
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How to Analyze Microbiome Data from Human-Impacted Island Ecosystem
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1
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56
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August 20, 2024
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Missing taxa using Unite classifier for ITS2
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9
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203
|
August 16, 2024
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Concatenate R1 and R2 for reads that can't join
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9
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1220
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August 7, 2024
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NovaSeq and Dada2 incompatibility.
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10
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3231
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August 6, 2024
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Amplicon sequencing on NextSeq 600 cycle kits
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4
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588
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August 6, 2024
|
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Merging sample sets with drastically different frequencies
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1
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60
|
August 1, 2024
|
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Determine if a microbial community is predictive of another
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2
|
80
|
July 30, 2024
|
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Database for ITS2
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6
|
227
|
July 28, 2024
|
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Alpha diversity for each phylum
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1
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77
|
July 28, 2024
|
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polyA in several reads of 16s
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6
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395
|
July 25, 2024
|
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Why is using rarefaction curves to help determine sampling depth prior to producing core diversity metrics not considered p-hacking/data-peeking?
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3
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336
|
July 24, 2024
|
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multiple sequences assigned to same organism, copy number issue or best guess?
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5
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254
|
July 23, 2024
|
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Taxonomic Data: Using 18S-Nemabase in Qiime2 instead of Silva?
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18
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1092
|
July 23, 2024
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