Issue with SILVA 138.2 and RESCRIPt Compatibility

General Discussion
1

In July, a new release of the SILVA taxonomy (138.2) was published. I attempted to build a database using RESCRIPt with this version but encountered the following error:

Plugin error from rescript:

  Parameter 'version' received '138.2' as an argument, which is incompatible with parameter type: Str % Choices('128', '132')¹ | Str % Choices('138')² | Str % Choices('138.1')³

I was able to successfully build a database for version 138.1 using RESCRIPt, but the new 138.2 version seems to cause issues. Could you please advise whether an update is planned to support the latest SILVA 138.2 release?

2

Hello!
Version 138.2 is available in the latest rescript update.
To install it, in qiime2 version 2024.5 you can run:

pip install git+https://github.com/bokulich-lab/RESCRIPt.git
qiime dev refresh-cache

Best,

3 Likes
3

Yes, it works! Thank you a lot)

1 Like