Topics tagged filtering

Topic	Replies	Views	Activity
Alpha-diversity after filtering General Discussion filtering	6	2975	March 25, 2019
Error in Mask Alignment User Support filtering , align	4	738	April 20, 2019
Alignment/Tree Building and Filtering samples User Support filtering , tree	3	758	April 14, 2019
Dada2 denoise - why do I have so many reads filtered out User Support dada2 , filtering	11	6717	April 5, 2019
After Filter with Negative Controls (Decontam) User Support filtering , decontam	4	1042	March 27, 2019
How to accept the shared features table by group? User Support filtering	5	465	March 17, 2019
ITS + 16S sequences in the same fastq file, how to separate them before DADA2? User Support dada2 , filtering , import , its , cutadapt	3	1164	March 15, 2019
I'm loosing too many OTUs with taxa filter-table (~80%)--is this a normal/common phenomenon? General Discussion filtering , feature-classifier , taxonomy , taxa	8	1684	February 5, 2019
Table.qza is getting bigger following filter-features Technical Support filtering	1	365	January 22, 2019
Filtering OTU table by abundance <0.1% General Discussion filtering	6	4104	January 14, 2019
Selecting samples from separate sequencing runs User Support filtering	2	453	January 12, 2019
FeatureData filtering User Support filtering	5	462	January 5, 2019
How low can I go? (into and out of denoising) General Discussion dada2 , deblur , filtering	8	1200	December 17, 2018
Filtering Blank Taxonomic Ranks for Import into Phyloseq User Support filtering , export	2	1570	December 16, 2018
Filter demultiplexed (demux.qza) file Ideas and Suggestions filtering , demux , pending-development	1	897	November 6, 2018
Filtering sequences by feature table User Support filtering	3	6229	December 5, 2018
Can you pre-filter data by raw sequence read length before denoising/truncating/clustering? User Support filtering	6	1256	November 16, 2018
Include_ids argument in filter_samples method? Ideas and Suggestions filtering	5	535	October 5, 2018
Filtering data analysis User Support filtering	5	458	October 21, 2018
Preparing data for analysis with dada2 denoising User Support dada2 , filtering , quality-filter , gneiss	4	1512	October 20, 2018
Failure when attempting to filter samples from table.qza User Support filtering	2	547	October 15, 2018
Is trimmomatic necessary before dada2? User Support dada2 , filtering , quality-filter , merge	3	2632	September 30, 2018
Filter rep-seq.qza based on filtered feature table User Support filtering	5	2890	September 19, 2018
Method to filter demultiplexed file User Support filtering , demux	10	2022	September 11, 2018
Metadata base filtering & re-running alpha and beta diversity metrics User Support filtering , diversity	8	793	September 2, 2018
Filtering by Sample ID not working User Support filtering , sql	4	2951	August 17, 2018
Warn if filter-samples returns empty table Ideas and Suggestions filtering , pending-development	1	461	June 20, 2018
Filter features based on proportion User Support filtering , pending-development	5	1847	July 14, 2018
Filtering samples by metadata, also filter req-seqs.gza User Support filtering	8	4217	July 12, 2018
Filter OTU table to generate a smaller phylogenetic tree file User Support filtering , feature-table	13	3470	July 9, 2018