Topics tagged RESCRIPt

Topic	Replies	Views	Activity
Error when using qiime taxa barplot after fragment-insertion Technical Support taxa , barplot , fragment-insertion , rescript	7	26	July 23, 2025
Greengenes2 and RESCRIPt User Support feature-classifier , taxonomy , rescript , greengenes2	3	59	August 9, 2025
SILVA 138.1 classifier trained on version 2023.5 and used in 2024.5 User Support feature-classifier , rescript	3	78	August 3, 2025
vsearch unrecognized option '--qseqout' Technical Support vsearch , rescript	4	9	August 1, 2025
Dealing with Poor Taxonomic Assignments User Support feature-classifier , taxonomy , rescript	7	66	July 26, 2025
Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt Tutorials feature-classifier , taxonomy , plugin-development , tutorials , rescript	26	60563	June 23, 2025
mismatch between taxonomy and sequence data that download from NCBI using qiime rescript get-ncbi-data Technical Support taxonomy , rescript , ncbi	4	24	June 19, 2025
RESCRIPt GTDB 226.0 Technical Support taxonomy , rescript	3	67	June 6, 2025
Almost all Reads are unclassified - custom 18S V4 classifier Technical Support feature-classifier , taxonomy , rescript	13	161	May 26, 2025
Contents of imported database General Discussion taxonomy , rescript	6	27	March 18, 2025
Assigning Taxonomy with the Silva Classifier Technical Support rescript	6	76	April 6, 2025
Filtering eukaryotes from SILVA database User Support taxonomy , rescript	4	55	February 17, 2025
RESCRIPT: species information in GTDB User Support rescript	5	60	February 15, 2025
How to train a GTDB SSU classifier using RESCRIPt Community Contributions feature-classifier , taxonomy , tutorial , rescript , ssu , gtdb	5	2171	January 13, 2025
How to train a UNITE classifier using RESCRIPt Tutorials feature-classifier , taxonomy , tutorial , its , unite , rescript	11	1682	January 3, 2025
Merging Custom Reference Sequences with rescript reference database Technical Support import , feature-classifier , rescript	2	34	January 11, 2025
...temporary files that no longer exist. Technical Support rescript	5	33	January 3, 2025
Using RESCRIPt to compile sequence databases and taxonomy classifiers from NCBI Genbank Tutorials taxonomy , rescript	8	14501	October 22, 2024
Training silva classifiers based on NCBI taxonomy General Discussion feature-classifier , rescript	1	210	October 3, 2024
RESCRIPt issue for --p-query retriving data from NCBI: No sequences for given query Library Plugin Support rescript	4	74	October 2, 2024
Sequences not retrieved via Rescript Technical Support rescript	3	29	October 10, 2024
Manually Adding Positive Controls to classifier or reference database General Discussion taxonomy , feature-table , rescript	4	495	August 30, 2024
qiime feature-classifier classify-sklearn low confidence despite 100% identity User Support feature-classifier , taxonomy , rescript	2	61	September 21, 2024
Snakemake pipelines for generating taxonomy classifiers Developer Discussion taxonomy , rescript , classifier	7	360	July 25, 2024
problem training taxonomic Naive Bayes classifier with SILVA database Technical Support feature-classifier , rescript	8	696	August 11, 2024
Rescript to Train Silva Naive Bayes classifier for 16S data User Support rescript	6	205	August 11, 2024
12s database using rescript - australian taxa only? Library Plugin Support rescript	7	201	June 6, 2024
Trouble with self-trained 18S Classifier - not assigning lower taxa levels User Support feature-classifier , rescript	3	169	June 7, 2024
Attribute error while attempting to use cull-seqs function in Rescript Technical Support rescript	8	343	May 13, 2024
Rescript from UNITE User Support rescript	4	195	April 30, 2024