Topics tagged RESCRIPt

Topic	Replies	Views	Activity
mismatch between taxonomy and sequence data that download from NCBI using qiime rescript get-ncbi-data Technical Support taxonomy , rescript , ncbi	3	22	May 19, 2025
RESCRIPt GTDB 226.0 Technical Support taxonomy , rescript	2	46	May 5, 2025
Almost all Reads are unclassified - custom 18S V4 classifier Technical Support feature-classifier , taxonomy , rescript	13	143	May 26, 2025
Contents of imported database General Discussion taxonomy , rescript	6	25	March 18, 2025
Assigning Taxonomy with the Silva Classifier Technical Support rescript	6	61	April 6, 2025
Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt Tutorials feature-classifier , taxonomy , plugin-development , tutorials , rescript	24	59134	February 8, 2025
Filtering eukaryotes from SILVA database User Support taxonomy , rescript	4	44	February 17, 2025
RESCRIPT: species information in GTDB User Support rescript	5	56	February 15, 2025
How to train a GTDB SSU classifier using RESCRIPt Community Contributions feature-classifier , taxonomy , tutorial , rescript , ssu , gtdb	5	2052	January 13, 2025
How to train a UNITE classifier using RESCRIPt Tutorials feature-classifier , taxonomy , tutorial , its , unite , rescript	11	1589	January 3, 2025
Merging Custom Reference Sequences with rescript reference database Technical Support import , feature-classifier , rescript	2	26	January 11, 2025
...temporary files that no longer exist. Technical Support rescript	5	27	January 3, 2025
Using RESCRIPt to compile sequence databases and taxonomy classifiers from NCBI Genbank Tutorials taxonomy , rescript	8	14291	October 22, 2024
Training silva classifiers based on NCBI taxonomy General Discussion feature-classifier , rescript	1	187	October 3, 2024
RESCRIPt issue for --p-query retriving data from NCBI: No sequences for given query Library Plugin Support rescript	4	64	October 2, 2024
Sequences not retrieved via Rescript Technical Support rescript	3	20	October 10, 2024
Manually Adding Positive Controls to classifier or reference database General Discussion taxonomy , feature-table , rescript	4	493	August 30, 2024
qiime feature-classifier classify-sklearn low confidence despite 100% identity User Support feature-classifier , taxonomy , rescript	2	43	September 21, 2024
Snakemake pipelines for generating taxonomy classifiers Developer Discussion taxonomy , rescript , classifier	7	356	July 25, 2024
problem training taxonomic Naive Bayes classifier with SILVA database Technical Support feature-classifier , rescript	8	610	August 11, 2024
Rescript to Train Silva Naive Bayes classifier for 16S data User Support rescript	6	166	August 11, 2024
12s database using rescript - australian taxa only? Library Plugin Support rescript	7	194	June 6, 2024
Trouble with self-trained 18S Classifier - not assigning lower taxa levels User Support feature-classifier , rescript	3	169	June 7, 2024
Attribute error while attempting to use cull-seqs function in Rescript Technical Support rescript	8	318	May 13, 2024
Rescript from UNITE User Support rescript	4	194	April 30, 2024
Naive-Bayes classifiers: q2_rescript vs q2_feature-classifier Technical Support feature-classifier , rescript	2	175	March 25, 2024
Taxonomic classification at subspecies level General Discussion dada2 , feature-classifier , rescript	1	179	February 5, 2024
Invalid Filepath: Qiime feauture classifier and pre-formated rescript seq file User Support feature-classifier , rescript	4	171	March 5, 2024
Dereplicated files are bigger than original files? User Support dereplicate , rescript	3	163	February 23, 2024
RESCRIPT install: "ModuleNotFoundError: No module named 'q2_types_genomics'" Technical Support rescript	4	1043	February 13, 2024