|
PERMANOVA and DESeq2: Re-evaluating Covariates After Subsetting by Time Point
|
|
1
|
27
|
June 9, 2025
|
|
Using output from QIIME2, I'm getting this error Error in model.frame.default(formula = dist_matrix ~ metadata$biome, drop.unused.levels = TRUE) : variable lengths differ (found for 'metadata$biome')
|
|
2
|
11
|
April 12, 2025
|
|
significant Permanova but non significant Permdisp
|
|
2
|
341
|
February 9, 2024
|
|
Difficulty interpreting the results of Permanova and Bray Curtis
|
|
5
|
634
|
November 23, 2023
|
|
significative adonis test, but no significance in paired adonis test?
|
|
3
|
970
|
October 2, 2023
|
|
PERMANOVA and beta diversity analyses nested
|
|
2
|
365
|
September 28, 2023
|
|
can I run anosim for interactions (two factors)?
|
|
5
|
713
|
August 3, 2023
|
|
Using PERMANOVA in R to compare unbalanced groups with small sample size
|
|
5
|
4214
|
May 27, 2023
|
|
PERMANOVA analysis interpretation
|
|
3
|
680
|
April 28, 2023
|
|
Does the skbio PERMANOVA function have a pairwise option like in qiime2?
|
|
2
|
611
|
February 14, 2023
|
|
PERMANOVA analysis in Jupyter notebook
|
|
4
|
975
|
March 10, 2023
|
|
how to take into account sample replicates in beta-group-significance testing?
|
|
5
|
855
|
February 15, 2023
|
|
PERMANOVA on small sample size?
|
|
3
|
1353
|
September 17, 2022
|
|
Does it make sense to explore differential abundant OTUs, when 2 groups are not significantly differente according to Permanova?
|
|
5
|
1128
|
September 24, 2021
|
|
What was the model used for the PERMANOVA (e.g. free permutations of residuals - n=5 does not allow for many permutations at the lowest level)?
|
|
6
|
1204
|
September 10, 2021
|
|
Unbalanced sampling design and permanova
|
|
4
|
967
|
September 7, 2021
|
|
Error in Beta Diversity - Pairwise sampling
|
|
3
|
1025
|
July 13, 2021
|
|
Permanova analysis for distances
|
|
9
|
2635
|
February 26, 2021
|
|
How to properly design formulas in Adonis ?
|
|
4
|
2997
|
February 12, 2021
|
|
Plugin error from diversity QIIME 2020.8 PERMANOVA
|
|
2
|
764
|
November 15, 2020
|
|
comparing dissimilarity within and between groups (adonis-anosim-Kendall's W)
|
|
0
|
1942
|
May 27, 2020
|
|
PERMANOVA- beta-group-significance
|
|
5
|
696
|
June 21, 2020
|
|
Understanding PERMANOVA QIIME2 Statistics for Beta Diversity
|
|
5
|
8198
|
April 16, 2020
|
|
Determining dispersion for beta diversity
|
|
3
|
2849
|
January 6, 2020
|
|
PCoA and PERMANOVA results seem to contradict each other for beta diversity analysis
|
|
4
|
4954
|
September 14, 2019
|
|
ADONIS: correct interpretation of interaction among factors
|
|
2
|
6683
|
July 22, 2019
|
|
Adding more functions to PERMANOVA
|
|
5
|
4166
|
March 11, 2019
|
|
PCO trajectory to mean of replicates
|
|
3
|
683
|
January 7, 2019
|
|
Beta diversity significance values not as expected
|
|
2
|
875
|
January 7, 2019
|
|
Beta group significance. High p-value in Permanova testing
|
|
10
|
2339
|
December 3, 2018
|
