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PERMANOVA and DESeq2: Re-evaluating Covariates After Subsetting by Time Point
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1
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34
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June 9, 2025
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Using output from QIIME2, I'm getting this error Error in model.frame.default(formula = dist_matrix ~ metadata$biome, drop.unused.levels = TRUE) : variable lengths differ (found for 'metadata$biome')
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2
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12
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April 12, 2025
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significant Permanova but non significant Permdisp
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2
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350
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February 9, 2024
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Difficulty interpreting the results of Permanova and Bray Curtis
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5
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658
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November 23, 2023
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significative adonis test, but no significance in paired adonis test?
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3
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997
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October 2, 2023
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PERMANOVA and beta diversity analyses nested
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2
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366
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September 28, 2023
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can I run anosim for interactions (two factors)?
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5
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720
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August 3, 2023
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Using PERMANOVA in R to compare unbalanced groups with small sample size
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5
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4374
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May 27, 2023
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PERMANOVA analysis interpretation
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3
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688
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April 28, 2023
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Does the skbio PERMANOVA function have a pairwise option like in qiime2?
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2
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621
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February 14, 2023
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PERMANOVA analysis in Jupyter notebook
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4
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990
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March 10, 2023
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how to take into account sample replicates in beta-group-significance testing?
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5
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867
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February 15, 2023
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PERMANOVA on small sample size?
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3
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1389
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September 17, 2022
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Does it make sense to explore differential abundant OTUs, when 2 groups are not significantly differente according to Permanova?
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5
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1140
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September 24, 2021
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What was the model used for the PERMANOVA (e.g. free permutations of residuals - n=5 does not allow for many permutations at the lowest level)?
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6
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1210
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September 10, 2021
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Unbalanced sampling design and permanova
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4
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973
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September 7, 2021
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Error in Beta Diversity - Pairwise sampling
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3
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1032
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July 13, 2021
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Permanova analysis for distances
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9
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2674
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February 26, 2021
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How to properly design formulas in Adonis ?
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4
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3045
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February 12, 2021
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Plugin error from diversity QIIME 2020.8 PERMANOVA
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2
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766
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November 15, 2020
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comparing dissimilarity within and between groups (adonis-anosim-Kendall's W)
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0
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1945
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May 27, 2020
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PERMANOVA- beta-group-significance
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5
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696
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June 21, 2020
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Understanding PERMANOVA QIIME2 Statistics for Beta Diversity
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5
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8304
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April 16, 2020
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Determining dispersion for beta diversity
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3
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2877
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January 6, 2020
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PCoA and PERMANOVA results seem to contradict each other for beta diversity analysis
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4
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4982
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September 14, 2019
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ADONIS: correct interpretation of interaction among factors
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2
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6709
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July 22, 2019
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Adding more functions to PERMANOVA
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5
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4186
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March 11, 2019
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PCO trajectory to mean of replicates
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3
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687
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January 7, 2019
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Beta diversity significance values not as expected
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2
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882
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January 7, 2019
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Beta group significance. High p-value in Permanova testing
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10
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2341
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December 3, 2018
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