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Which sequence files should be used for demultiplexing and DADA2 in QIIME 2?
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2
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50
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February 23, 2026
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No "Unclassified" etc taxa detected with grep in multiple unfiltered UNITE dbs?
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2
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47
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February 19, 2026
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The differences in taxonomy output by the feature-classifier trainer and the full-length trainer
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7
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106
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February 18, 2026
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ANCOM-BC2 versions
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2
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68
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February 15, 2026
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How are feature IDs generated in cluster-features-open-reference for non-reference OTUs?
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4
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46
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February 14, 2026
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Importing my data to qiime
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3
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70
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February 14, 2026
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understanding diversity core-metrics-phylogenetic sample filtering
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4
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46
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February 13, 2026
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"over-classification" of ASV taxonomy?
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3
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80
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February 10, 2026
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Optimal ubuntu version for qiime2/dada2 scripts
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3
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60
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February 5, 2026
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How to perform filtering step for forward read only analysis?
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14
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188
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January 31, 2026
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guidance using quality-control evaluate-taxonomy and evaluate-composition
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9
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156
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January 19, 2026
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High read loss due to artifacts and chimera after denoising 16S V3-V4 paired-end reads
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2
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62
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January 17, 2026
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python api: complete usage examples
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4
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81
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January 16, 2026
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PaBio 16s full length results
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13
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178
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January 15, 2026
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core metrics results paradox
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10
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87
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January 5, 2026
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Reverse read quality with 806r_Mod primer
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4
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79
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January 5, 2026
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Denoising low quality reverse reads in paired-end sequencing reads
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5
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83
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January 3, 2026
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Plugin error from fondue: Samples missing BioProjectID
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9
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116
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January 3, 2026
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Troubleshoot classification where all ASVs are unassigned?
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8
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115
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January 2, 2026
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Assistance with Alpha Rarefaction curve
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4
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50
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January 2, 2026
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qiime cutadapt does not have an untrimmed sequences output
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5
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129
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January 1, 2026
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DADA2 denoising taking long time
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7
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115
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January 1, 2026
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Questions about performing quality control with dada2 and generating a feature table
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3
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50
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December 30, 2025
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Evaluate custom taxonomic classifier with RESCRIPt?
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6
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152
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December 28, 2025
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How to cluster sequences into OTUs, not ASV
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7
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96
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December 27, 2025
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First time using QIIME2 — DADA2
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4
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80
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December 25, 2025
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How to interpret the sign change on x-axis on Ancom Volcano Plots ?
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8
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121
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December 23, 2025
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How can I import an existing Bracken database into QIIME2?
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3
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43
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December 21, 2025
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Guidance for feature filtering step of qiime2
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5
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135
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December 20, 2025
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Downloading Qiime2 2024.10 on Hoffman2
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11
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147
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December 14, 2025
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