Silva 138 for Qiime2

Hey,
are there some plans to update Silva138 database for Qiime?

Cheers,
Damian

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Hello Damian,

Sounds like @SoilRotifer is going to try to import this new database!

Not sure if there is an official thread for this new database, yet!

Colin

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Hi @colinbrislawn & @thedam,

I’m working on this, and tweaking some of the quality control steps I use to generate this reference set. I should have something to share on this around the New Year. :fireworks:

-Mike

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Hi!
Thanks for working on it. Do you have news about the Silva138 for qiime2?
Best
Yann

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Hi @yannreynaud,

Sorry, I forgot to update ya’ll in this thread. I made a new post here about a working version of SILVA 138:

-Mike

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Hi! Thanks for answering me and for giving this SILVA138 available for the qiime2 users! All the best
Yann

2 Likes

Thanks a lot! The files that you kindly upload are ready to use o we have to cluster it with vsearch?

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Hi @Luz_Chacon_Jimenez, for classifying your sequences, it’s best to make use of the files as they are, you can rebuild the classifiers yourself, or use the ones provided. :slight_smile:

FYI, these are the NR99 clustered data from SILVA. :desktop_computer:

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