SILVA 132 Classifiers 341f-806r region

Micro_Biologist · August 27, 2019, 10:28am

I couldn’t find classifiers for this region, so I used code available here to train new ones, and thought I might as well share them for all to use.

Here is the new version for using primers:

f_primer = 'CCTACGGGNGGCWGCAG'
r_primer = 'GACTACHVGGGTATCTAATCC'

jwdebelius · August 27, 2019, 10:51am

Thank you! Is this QIIME2-2019.7?

Best,
Justine

Micro_Biologist · August 28, 2019, 6:23am

Yes, I couldn’t use the ones I had found as they had been made using the wrong version for scikit-learn.

jwdebelius · August 28, 2019, 7:36am

Awesome!

Thank you so much!

kumars · August 29, 2019, 4:13am

Worked very nicely. By any chance do you also have 97 version of this? I mean silva_132_97_v3v4_q2_2019-7
Thanks

Micro_Biologist · August 29, 2019, 1:59pm

To be computed

kumars · August 29, 2019, 10:26pm

Awesome, Thanks

Yining · December 17, 2019, 5:19am

Thank you for your sharing. It really helped a lot!