I couldn’t find classifiers for this region, so I used code available here to train new ones, and thought I might as well share them for all to use.
Here is the new version for using primers:
f_primer = 'CCTACGGGNGGCWGCAG'
r_primer = 'GACTACHVGGGTATCTAATCC'
99 16S only
97 16S only
Thank you! Is this QIIME2-2019.7?
Yes, I couldn’t use the ones I had found as they had been made using the wrong version for scikit-learn.
Worked very nicely. By any chance do you also have 97 version of this? I mean silva_132_97_v3v4_q2_2019-7
Thank you for your sharing. It really helped a lot!