I have my files in a folder (named qiime2) on my local computer.
Inside the folder I have my emp file (also a folder) and the metadata file as tsv file.
I have these files in the emp folder (barcodes.fastq.gz, reverse.fastq.gz, and forward.fastq.gz).
I am using the Atacama tutorial for paired end reads.
I am trying to import the data from the shared folder into qiime (into a new directory that I created). I used this import script:
qiime tools import
My own script based on the above:
qiime tools import --type 16S-emp-paired-end-sequences
Qiime2 Report: 1/1) Invalid value for ‘–input-path’: Path ‘16S-emp-paired-end-sequences’
does not exist.
Note: The file name in the shared folder is “16S-emp-paired-end-sequences”.
Please, what does this mean?
Thank you for your response.