When I used greengene for taxonomy classification, the results contains results as follows:
I am confused with the difference between these two results. Also, I don’t know what the  stand for. I’ve searched online but got no answers, so I posted my questions here for help. It would be really appreciated if anyone could give me the answer.
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Looking at the .csv file exported (genera level) from the taxonomy barplot I got confused: a lot of the taxa are not classified down to genus level, which I understand, but then same taxa classified only to a certain level, let’s say class level, appear twice - e.g.
k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria; __ ; __ ; __ and k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__;f__;g__
And this appears in several instances. Why is that? I am trying to produce a filtered ba…
Can someone remind me the meaning and difference again between different OTUs assigned like the following:
k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae
k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__; s__
k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides
k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroida…
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What is a "Feature" exactly?
MemoryError with q2-feature-classifier
@SoilRotifer Thank you very much!
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