I have two whole metagenome data, also ORF.fasta file i want to separate the 16S marker gene sequence and to analysis in qiime, is their and code available.
Thank you for your valuable time
I have reclassified this post as “other bioinformatics tools” since this is not really a QIIME 2 question, but about other methods unrelated to QIIME 2 (even though it sounds like eventually you want to input these data into QIIME 2).
You could try SortMeRNA, it’s one tool I can think of designed for this very purpose: https://github.com/biocore/sortmerna
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