Silva 138 for Qiime2

[SoilRotifer (Mike Robeson)]

Hi there, I just wanted to refer the everyone over to the tutorial linked below. We hope the process of constructing your own reference sequence database (e.g. SILVA) is far less onerous.

Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt

Please consider this tutorial a living document, which may change based upon community feedback and ongoing plugin development. RESCRIPt RESCRIPt (REference Sequence annotation and CuRatIon Pipeline) is a python package and QIIME 2 plugin for formatting, managing, and manipulating sequence reference databases. This package was designed for compiling, manipulating, and evaluating sequence reference databases from SILVA, NCBI, Greengenes, GTDB, and other sources, and for construc…

-Best wishes!
-Mike