Reverting to Qiime2 after using DADA2 in R

[Nicholas_Bokulich]

@HollyJ

which I have done, but not the other artifact needed to complete the vsearch cluster step and feature-classifier classify-sklearn steps - the rep-seq part. Do you know how I can do that?

Down at the bottom of that tutorial:

@ChristianEdwardson

Bonus: Export and Representative Sequences from dada2:

In R:

uniquesToFasta(seqtab, fout='rep-seqs.fna', ids=colnames(seqtab))

In QIIME 2:

qiime tools import \
--input-path rep-seqs.fna \
--type 'FeatureData[Sequence]' \
--output-path rep-seqs.qza

Let me know if that works!