RESCRIPt plugin for qiime2 in a docker container

[Angela1971]

Is it possible to use a RESCRIPt plugin for qiime2 in a docker container? How to install plugins into docker? Thank you in advance.

[Nicholas_Bokulich]

Hi @Angela1971 ,

Please see this tutorial:

Installing Community Plugins in Docker

Installing Community Plugins (https://library.qiime2.org) is a breeze with Docker! First, let’s launch an interactive Docker container: docker run --rm -it --name my-custom-container qiime2/core:2018.11 /bin/bash Next, pick a plugin to install: I will try out @cduvallet’s q2-perc-norm. Running the current install command: # This plugin is just an example, please follow the directions for # the plugin (or plugins) you wish to install! conda install -c cduvallet q2_perc_norm -y qiime dev refre…

Good luck!

[Angela1971]

Thank you, Nicholas!