Regarding taxonomic classification Silva vs greengenes

My aim is to import qiime2 results into PICRUST2 for function prediction. I want to use the silva database as greengenes haven’t been updated for a long time . Is there a way to import silva assigned results to picrust2?

Hi @razz1618,

PICRUSt2 can work directly with output from your denoised sequences and does not require any mapping to GreenGenes like PICRUSt1. Checkout the paper and tutorial for more details.



yay…thats great…thanks

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