Hi,
My aim is to import qiime2 results into PICRUST2 for function prediction. I want to use the silva database as greengenes haven’t been updated for a long time . Is there a way to import silva assigned results to picrust2?
Hi @razz1618,
PICRUSt2 can work directly with output from your denoised sequences and does not require any mapping to GreenGenes like PICRUSt1. Checkout the paper and tutorial for more details.
-Mike
2 Likes
yay…thats great…thanks
This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.