QIIME2 Visualisations

[Taylorr (Taylor Rayne)]

Hello all!

I just ran my sequencing data through dada2 and have the following files I wish to visualise!

*rep-seq.qza
*table.qza
*stats.qza

When I try to use qiime tools view in the terminal I get an error that my file is 'not a QIIME 2 Visualization'. Also, when I upload these files directly to view.qiime2.org, I am not getting any meaningful information, just the metadata of the files.

Do I have to convert these files to .qzv format in order to view them? Is this the general procedure for viewing qiime artefacts?

I appreciate the enlightenment

Taylor

[llenzi (Luca)]

Hi @Taylorr,

Yes, you can use the following command:
qiime metadata tabulate
--m-input-file stats.qza
--o-visualization stats.qzv

Then you can load the 'stats.qzv' artefact in the view.qiime2.org

Cheers
Luca

[Taylorr (Taylor Rayne)]

Amazing! Thank you @llenzi !

Taylor