Could anyone tell me what the most current taxonomic databases are used in Qiime2? Would be Silva realease 138?
Thanks
Jessy
Could anyone tell me what the most current taxonomic databases are used in Qiime2? Would be Silva realease 138?
Thanks
Jessy
Welcome to the forum @Jessica_Bianca_da_Si !
QIIME 2 is not tied to any specific database. Any database can be used with QIIME 2, provided that it is in the correct format.
However, several commonly used databases are pre-formatted and made available on the QIIME 2 data resources site for the convenience of the community.
If you are looking for formatted SILVA 138 formatted files, you can find them, and some description of the formatting, here: Data resources — QIIME 2 2021.2.0 documentation
@Nicholas_Bokulich, thanks for answer!
By the way, I trying to use Silva 138, but I had a error with the claasifier:
Plugin error from feature-classifier:
The scikit-learn version (0.21.2) used to generate this artifact does not match the current version of scikit-learn installed (0.23.1). Please retrain your classifier for your current deployment to prevent data-corruption errors.
How can I solve this?
Thanks,
You can search the forum archives to see lots of info relating to this error, e.g., see discussion here:
Good luck!