QIIME2 on Docker step by step?

General Discussion
1

Hi all, I am looking for a good video/handout showing 16 rRNA microbiome analysis using Qiime2 on Docker as step by step. Thanks.

1 Like
2

Hello @Moh,

Welcome to the forums! :wave:

First, here's how you install Qiime 2 inside a Docker container:
https://docs.qiime2.org/2023.5/install/virtual/docker/

There's something even better! A step-by-step tutorial by @.thermokarst that shows you how to run the Moving-Pictures tutorial from within the docker container created above! :whale:

Let us know if you have any questions about how to set this up!

Colin

2 Likes
3

if you have the proper guideline please send
Thanks

4

As far as I know, the docker install guide for 2023.2 and the tutorial listed above are the best resources.

If anyone has a newer guide or questions about that old guide, feel free to post that here!

2 Likes
5

Nothing is given on that web page for the beginner.

6

That's correct. Docker is a cloud-native orchestration service, and this does expect some baseline knowledge of both Linux and containers.

For beginners, I would recommend a Native install of Qiime2 or run Qiime2 online using Galaxy, no install needed!

The brand new QIIME 2 Cancer Microbiome Intervention Tutorial is also beginner friendly.

1 Like