Preparing SILVA 138 rep seqs

Hi,

I would like to make 97% and 99% OTU data sets derived from SILVA 138 data for using “feature-classifier fit-classifier-naive-bayes” command. How should I do to make the OTU data sets? Shoud I use any other tools to align and annotate the sequences?

Hi @HIROSUKE,

We’ll have some more news about this near the end of the month. For now, please take a look at this and other related SILVA 138 related forum threads:

Also, there is no need to make a 97% classifier, unless you are limited by memory and storage space. :slight_smile:

-Mike

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