Odd display of demux plot

Hello again,
Thanks for digging up the issue associated with NovaSeq from the dada2 github page!

QIIME 2 is just running a dada2 R script under the hood, so if you want to keep it all within QIIME 2 you could make a development branch of q2-dada2 and alter the R script to adjust the error model matrix inside that R script. Let me know if you want to go that route and have trouble locating the files that need to be modified and I can help you with that.

Otherwise it may just be simplest to process your data in dada2 directly in R, then import to QIIME 2 (see tutorial to do this below).

@benjjneb any other ideas? If this will become a common problem it might be neat to expose this functionality in q2-dada2.

Here is a tutorial for importing dada2 data from R into QIIME 2:

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