I just want to know how to make a simple table with the number of OTU associated with each sample. Currently there is a qiime diversity core-metrics-phylogenetic but it requires that I choose a sampling depth. How can I view the number of OTUs in all my samples without choosing a sampling depth? This would be similar to the summarize function in Qiime 1.
Thanks in advance
How about this script?
You can also return diversity metrics without rarefying / choosing a sampling depth by using this script:
Let me know if those help!
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