Dear developers,
I think it would be handy to have mafft --large
option available.
Many people, including myself are taking advantage of q2 pipeline to process long 16S rRNA reads generated by Oxford Nanopore technology.
Usually mafft step aligning seqs depletes RAM and the job stops. mafft --large
option has a possibility to circumvent this problem, by saving tmp
data into files instead of using RAM.
Would that be a possibility?