I started over with the original table.qza file and followed the tutorial linked above and was able to get the Feature table with taxonomy. However, the Feature ID is still gibberish instead of "ASV1, ASV2" etc. I saw this where you said it's not a good idea to rename them. I guess I can create a separate column and name ASV1, ASV2 manually beside each Feature ID so that each Feature ID is still retained. However, I have lost the relative abundance count that was outputted with the taxa collapse command.
How do I convert to relative abundance with the new table-with-taxonomy.biom/table-with-taxonomy.tsv file? The taxa collapse command is only allowed the table.qza and taxonomy.qza inputted as artifacts...
Please advise, thank you. 