Is DADA2 ok for ion torrent and 454 sequencing now?

wym199633 · March 12, 2018, 1:09am

I have data which is sequenced by torrent and 454. Can I denoise it by DADA2 right now?

thermokarst · March 12, 2018, 9:34pm

Hi @wym199633!

According to the DADA2 docs - yes!

These parameters aren't currently exposed in q2-dada2, the plugin that wraps DADA2 in QIIME 2. We have an open issue to support this, and the code is currently in review, so we are hoping it will be available in the next release of QIIME 2. Stay tuned!

wym199633 · March 12, 2018, 10:00pm

Great! Looking forward to it!

thermokarst · March 13, 2018, 7:00pm

An off-topic reply has been split into a new topic: How to upgrade QIIME 2 VirtualBox?

Please keep replies on-topic in the future.

system · April 14, 2018, 1:00am

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