How to install a plugin in qiime 2 docker container

[Lennon_Lee]

One more question, I installed my QIIME2 by docker, can I install the plugin in docker as well?

Thank for your patience

[elsa]

I believe you can achieve that by editing the Dockerfile and building the image yourself. But I can't find it

[elsa]

Part 1: Containerize an application | Docker Docs << this example might be of help.

[thermokarst]

Check out this thread for some discussion:

Install phyloseq in qiime2 docker container

Hi, I'm currently trying to install the R package 'phyloseq' in your Qiime2 2017.12 docker container. I have tried using the conda install -c bioconda bioconductor-phyloseq=1.22.3 command. It gives me a list of the dependencies that requires endless installation. I have also tried to install it using these two methods in the R 3.4.1: install.packages("devtools") library("devtools") install_github("phyloseq", "joey711") library(phyloseq) source("https://bioconductor.org/biocLite.R") biocL…